View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_40 (Length: 477)
Name: NF17763_low_40
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_40 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 12024047 - 12024501
Alignment:
| Q |
1 |
ttgacatcatccacaagattatgtaaaacaaacggccatgaaaagcatcactcagttacttacggactcagcagcactcaaccaaaatctaaacatgtag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12024047 |
ttgacatcatccacaagattatgtaaaacaaacggccatgaaaagcatcactcagttacttatggactcagcagcactcaaccaaaatctaaacatgtag |
12024146 |
T |
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| Q |
101 |
aaaacattgataataaataacagagtaaacgttatattttgtctggtgatgtgtcaagcgttgtcacaatagtctttgggatttggatcctctaactgag |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12024147 |
aaaacatcgataataaataacagagtaaacgttatattttgtctggtgatgtgtcaagcattgtcacaatagtctttgggatttggatcctctaactgag |
12024246 |
T |
|
| Q |
201 |
aagaaaagggttgnnnnnnnaacgaaatcatgatttgttataatgtacctggattatctacctttattttggtaattaatggtagatattactcatttta |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
12024247 |
aagaaaagggtt-tttttttaacgaaatcatgatttgttataatgtaccgggattatctacctttattttggtaatcaatggtagatattactcacttta |
12024345 |
T |
|
| Q |
301 |
cactctaaagtgaattgtgcactaaccgaatgtatcaaaatttcaaaacaagcattgattgtctttcattagttagctagtttgaccctccacgtgtttt |
400 |
Q |
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| T |
12024346 |
cactcta---------------------aatgtatcaaaatttcaaaacaagcattgattgtctttcattagttagctagtttgaccctcctcgtgtttt |
12024424 |
T |
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| Q |
401 |
tggttagtcagtttaatctctgaatttacttacaaaatacacgcttgaatatgtttctataattcaaggattatcgt |
477 |
Q |
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| T |
12024425 |
cggttagtcagtttaatctctgaatttacttacaaaatacacgcttgaatatgtttctataattcaaggattatcgt |
12024501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 39421566 - 39421655
Alignment:
| Q |
228 |
tcatgatttgttataatgtacctggattatctacctttattttggtaattaatggtagatattactcattttacactctaaagtgaattg |
317 |
Q |
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|||||||||||||| ||||| | | ||||||||||| |||| |||| |||||| ||||||||||| |||| ||| ||||||| |||| |
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| T |
39421566 |
tcatgatttgttatggtgtacttctaatatctacctttgatttgttaatcaatggttgatattactcactttatactttaaagtggattg |
39421655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 38603060 - 38603145
Alignment:
| Q |
228 |
tcatgatttgttataatgtacctggattatctacctttattttggtaattaatggtagatattactcattttacactctaaagtga |
313 |
Q |
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| T |
38603060 |
tcatgatttgttataatgtacctacaatatctacctttgattttttaattaacggttgatattattcactttacactctaaagtga |
38603145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 37757530 - 37757445
Alignment:
| Q |
228 |
tcatgatttgttataatgtacctggattatctacctttattttggtaattaatggtagatattactcattttacactctaaagtga |
313 |
Q |
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| T |
37757530 |
tcatgacttgttataatgtacctacaatatctacctttgattttttaattaacgattgatattattcactttacactctaaagtga |
37757445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 37763278 - 37763193
Alignment:
| Q |
228 |
tcatgatttgttataatgtacctggattatctacctttattttggtaattaatggtagatattactcattttacactctaaagtga |
313 |
Q |
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| T |
37763278 |
tcatgacttgttataatgtacctacaatatctacctttgattttttaattaacgattgatattattcactttacactctaaagtga |
37763193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 25584056 - 25584016
Alignment:
| Q |
273 |
taattaatggtagatattactcattttacactctaaagtga |
313 |
Q |
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| T |
25584056 |
taattaatggttgatattactcactttacactctaaagtga |
25584016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 7655133 - 7655100
Alignment:
| Q |
285 |
gatattactcattttacactctaaagtgaattgt |
318 |
Q |
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| T |
7655133 |
gatactactcattttacactctaaagtgaattgt |
7655100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 9521886 - 9521838
Alignment:
| Q |
268 |
tttggtaattaatggtagatattactcattttacactctaaagtgaatt |
316 |
Q |
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|||| ||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
9521886 |
tttgttaattaatggttgatattactcactttacactctaaagtgaatt |
9521838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 48741458 - 48741408
Alignment:
| Q |
255 |
tatctacctttattttggtaattaatggtagatattactcattttacactc |
305 |
Q |
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| T |
48741458 |
tatctacctttaatttgttaattaatggttgatatcagtcattttacactc |
48741408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 50332665 - 50332604
Alignment:
| Q |
255 |
tatctacctttattttggtaattaatggtagatattactcattttacactctaaagtgaatt |
316 |
Q |
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||||||||||| |||| ||||||||||| |||||||| | |||||| ||||||||||||| |
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| T |
50332665 |
tatctacctttgatttgttaattaatggtcaatattactaactttacattctaaagtgaatt |
50332604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 51672512 - 51672596
Alignment:
| Q |
228 |
tcatgatttgttataatgtacctggattatctacctttattttggtaattaatggtagatattactcattttacactctaaagtga |
313 |
Q |
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|||||||||||||| ||||| ||| | ||||||| |||| |||| ||||||| ||| |||||| || ||||||||||||||||| |
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| T |
51672512 |
tcatgatttgttatgatgtatctgcaatatctac-tttaatttgttaattaacggttgatattgtccactttacactctaaagtga |
51672596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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