View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_41 (Length: 470)
Name: NF17763_low_41
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 455
Target Start/End: Original strand, 55171965 - 55172401
Alignment:
| Q |
19 |
gaagagtcttacaggtagtccaacagtggtagccaagatggaaatgtagttggttccaaccttgaagttagctggttgctcaaattcaaaagatttttct |
118 |
Q |
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| T |
55171965 |
gaagagtcttacaggtagtccaacagtggtagccaagatggaaatgtagttggttccaaccttgaagttagctggttgctcaaattcaaaagatttttct |
55172064 |
T |
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| Q |
119 |
tcatgggtaccatgatcagtacctattacaaatcaaagttagaatcatataaaactcttgccatttcctctcctctcactcaccattgccgtttattatt |
218 |
Q |
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| T |
55172065 |
tcatgggtaccatgatcagtacctattacaaatcaaagttagaatcatataaaactcttgccatttcctctcctatcactcaccattgtcgtttattatt |
55172164 |
T |
|
| Q |
219 |
gaaattatgttcttaccaatgtattgtccattaacaaatgcggatagtgtgtgtccaagactcataatacgaagaattgcactcttctttggcaagtctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55172165 |
gaaattatgttcttaccaatgtattgtccattaacaaatgcggatagtgtgtgtccaagactcataatacgaagaattgcactcttctttggcaagtctt |
55172264 |
T |
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| Q |
319 |
ctggacccaactcaaagctgcattagaaaaaccataattaatttatgatagatgtggggaatgagttgcatatttcaaatttaattaaggttgaatgaat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55172265 |
ctggacccaactcaaagctgcattagaaaaaccataaataatttatgatagatgtggggaatgagttgcatatttcaaatttaattaaggttgaatgaat |
55172364 |
T |
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| Q |
419 |
gaatcctcacctggtggtgtaccatccataatctgtg |
455 |
Q |
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| T |
55172365 |
gaatcctcacctggtggtgtaccatccataatctgtg |
55172401 |
T |
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