View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_43 (Length: 455)

Name: NF17763_low_43
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_43
NF17763_low_43
[»] chr8 (3 HSPs)
chr8 (236-439)||(34009778-34009981)
chr8 (131-223)||(34009538-34009630)
chr8 (14-97)||(34009421-34009504)
[»] chr5 (4 HSPs)
chr5 (236-439)||(33147170-33147373)
chr5 (131-223)||(33146930-33147022)
chr5 (14-97)||(33146813-33146896)
chr5 (135-180)||(33190485-33190530)
[»] chr3 (1 HSPs)
chr3 (138-186)||(45902416-45902464)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 236 - 439
Target Start/End: Original strand, 34009778 - 34009981
Alignment:
Q  236 gagtggtatgacatgaaattaattattannnnnnnagttaattagtaataaaactgaatgagacatgtaaatttgattcaaccnnnnnnnngagtgtgtg 335  Q
    ||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  34009778 gagtggtatgacatgaaattaattattatttttttaattaattagtaataaaactgaatgagacatgtaaatttgattcaaccaaaaaaaagagtgtgtg 34009877  T
Q  336 tgagggcttcctaaaatcaatagaactaagatctattttcttaatacacatcgcgtccnnnnnnngttgtaaatttgattcaacctcataattacccata 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  34009878 tgagggcttcctaaaatcaatagaactaagatctattttcttaatacacatcgcgtccaaaaaaagttgtaaatttgattcaacctcataattacccata 34009977  T
Q  436 aact 439  Q
    ||||    
T  34009978 aact 34009981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 34009538 - 34009630
Alignment:
Q  131 aatataaagagaaattatatttgtaatatcattttgtaataagttttgaacaatttctccttcatactcaaatgagtggtataacatttcgct 223  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||    
T  34009538 aatataaagagaaattatatttgtaaaatcattttgtaataagtttcgaacaatttcccgttcatactcaaatgagtggtataacatttcgct 34009630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 34009421 - 34009504
Alignment:
Q  14 caaaggataaatatattgaaatactggacgtgttgtgaatcaaaggataaaatatattgaaatactgacattaactttaaactt 97  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  34009421 caaaggataaatatattgaaatactagacgtgttgtgaatcaaaggataaaatatattgaaatattggcattaactttaaactt 34009504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 236 - 439
Target Start/End: Original strand, 33147170 - 33147373
Alignment:
Q  236 gagtggtatgacatgaaattaattattannnnnnnagttaattagtaataaaactgaatgagacatgtaaatttgattcaaccnnnnnnnngagtgtgtg 335  Q
    ||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  33147170 gagtggtatgacatgaaattaattattatttttttaattaattagtaataaaactgaatgagacatgtaaatttgattcaaccaaaaaaaagagtgtgtg 33147269  T
Q  336 tgagggcttcctaaaatcaatagaactaagatctattttcttaatacacatcgcgtccnnnnnnngttgtaaatttgattcaacctcataattacccata 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||    
T  33147270 tgagggcttcctaaaatcaatagaactaagatctattttcttaatacacatcgcgtccaaaaaaagttgtaaatttgattcaacctcatatttacccata 33147369  T
Q  436 aact 439  Q
    ||||    
T  33147370 aact 33147373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 33146930 - 33147022
Alignment:
Q  131 aatataaagagaaattatatttgtaatatcattttgtaataagttttgaacaatttctccttcatactcaaatgagtggtataacatttcgct 223  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||    
T  33146930 aatataaagagaaattatatttgtaaaatcattttgtaataagtttcgaacaatttcccgttcatactcaaatgagtggtataacatttcgct 33147022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 33146813 - 33146896
Alignment:
Q  14 caaaggataaatatattgaaatactggacgtgttgtgaatcaaaggataaaatatattgaaatactgacattaactttaaactt 97  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  33146813 caaaggataaatatattgaaatactagacgtgttgtgaatcaaaggataaaatatattgaaatattggcattaactttaaactt 33146896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 33190485 - 33190530
Alignment:
Q  135 taaagagaaattatatttgtaatatcattttgtaataagttttgaa 180  Q
    |||||||||||||||||||||| || ||||||| |||| |||||||    
T  33190485 taaagagaaattatatttgtaaaattattttgtgataacttttgaa 33190530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 45902464 - 45902416
Alignment:
Q  138 agagaaattatatttgtaatatcattttgtaataagttttgaacaattt 186  Q
    |||||||| ||||||| |  ||||||||||||||| |||||||||||||    
T  45902464 agagaaataatatttgcacaatcattttgtaataaattttgaacaattt 45902416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University