View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_45 (Length: 449)
Name: NF17763_low_45
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Complemental strand, 40093322 - 40092895
Alignment:
| Q |
8 |
gctccatagttctgatgtgtatatggttcatgttagatatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaactaaaaac |
107 |
Q |
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| T |
40093322 |
gctccatagttctgatgtgtatatggttcatgttagatatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaactaaaaac |
40093223 |
T |
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| Q |
108 |
aagaaaagctgaacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgggatgtcctcattaagcttaggtt |
207 |
Q |
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| T |
40093222 |
aagaaaagctgaacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgggatgtcctcattaagcttaggtt |
40093123 |
T |
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| Q |
208 |
tttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaacaataaattatga |
307 |
Q |
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| T |
40093122 |
tttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaaaaataaattatga |
40093023 |
T |
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| Q |
308 |
acatttttaaaaggaacatccatcatcaactctccctccnnnnnnnnnnnnnnnnnnntcaacgatcaactcatgttttaacttgttttaaaatcaacct |
407 |
Q |
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| T |
40093022 |
acatttttagaaggaacatccatcatcaactctccct-aaaaaaaataaaaaaaaaaatcaatgatcaactcatgttttaacttgttttaaaatcaacct |
40092924 |
T |
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| Q |
408 |
caacttcatttgagtttcaataacacagg |
436 |
Q |
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| T |
40092923 |
cgacttcatttgagtttcaataacacagg |
40092895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 40062670 - 40062329
Alignment:
| Q |
8 |
gctccatagttctgatgtgtatatggttcatgttag-----atatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaacta |
102 |
Q |
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| T |
40062670 |
gctccatagttctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatctttggaggagcaagccattctatgcataattggaaacta |
40062571 |
T |
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| Q |
103 |
aaaacaagaaaagctgaacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgggatgtcctcattaagctt |
202 |
Q |
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| T |
40062570 |
caaacacgaaaatctgaacctgaagtccaactgttagactcagcagatcaatttggttatttccataaattactttgattgggatgtccacattaagctt |
40062471 |
T |
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| Q |
203 |
aggtttttctttgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaacaataaat |
302 |
Q |
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| T |
40062470 |
aggtttgtctttgttcccggtgtgactccctaagaattcatcaataatatcatcgaaagttataatttaataattcaagaacttaatggaaacaataaat |
40062371 |
T |
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| Q |
303 |
tatgaacatttttaaaaggaacatccatcatcaactctccct |
344 |
Q |
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| T |
40062370 |
tatgaacatttttggacggaacatccaagatcaactctccct |
40062329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 40080912 - 40080793
Alignment:
| Q |
85 |
atgcataattggaaactaaaaacaagaaaagctgaacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgg |
184 |
Q |
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| T |
40080912 |
atgcatatttagaaactaaaaacaagaaaagctgaacctgaagtccaactgttaaactcagtagatcaattttgttctttccggaaactagtgcgattgg |
40080813 |
T |
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| Q |
185 |
gatgtcctcattaagcttag |
204 |
Q |
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| T |
40080812 |
gatgtccacattaagcttag |
40080793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 40062311 - 40062245
Alignment:
| Q |
371 |
gatcaactcatgtttt-aacttgttttaaaatcaacctcaacttcatttgagtttcaataacacagg |
436 |
Q |
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||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
40062311 |
gatcaactcatatttttaacttgttttaaaatcaaccttgacttcatttgagtttcaataatacagg |
40062245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 40081019 - 40080933
Alignment:
| Q |
8 |
gctccatagttctgatgtgtatatggttcat-----gttagatatagtaatgagagaaatcattgggggagcaagcaattctatgca |
89 |
Q |
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| T |
40081019 |
gctccatagttctgatgtgtatatggttcatattagcttagatatagtaatgagagaaatcactgaaggagcaagccagtctatgca |
40080933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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