View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_46 (Length: 449)
Name: NF17763_low_46
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 2488215 - 2487782
Alignment:
| Q |
1 |
tgacagtttggtctccatgaatatgaatttgactttactttgtatatttgtactagctctcactcaaa--gaatatgaatctaatatatgtgctaaacca |
98 |
Q |
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| T |
2488215 |
tgacagtttggtctccatgaatatgaatttgactttactttgtatatttgtactagctctcactcaaaaagaatatgaatctaacatatgtgctaaacca |
2488116 |
T |
|
| Q |
99 |
atgctataacaatcaaattgtgataacacattagaaatcgtctttgatgtatgtgtactaaaatatttgggtacagtttagaatgccattcaagaaaaca |
198 |
Q |
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| T |
2488115 |
atgctataacaatcaaattgtgataacacattagaaatcgtctttgatgtatgtgtactaaaatatttgggtacagtttagaatgccattcaagaaaaca |
2488016 |
T |
|
| Q |
199 |
tgatgaaaatgtattcttaaatcaggttcccataccaaacaatacataaccagcagatggtaacaacaagtaaaccaaacaaaacctcaaaatcctaatt |
298 |
Q |
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| T |
2488015 |
tgatgaaaatgtattcttaaatcaggttcccataccaaacaatacataaccagcagatggtaacaacaagtaaaccaaacaaaacctcaaaatcctaatt |
2487916 |
T |
|
| Q |
299 |
gatcttttaaaatattttattgaagtaacctgagtttgtaggattgctttgcgaaccaacgctgctaatatttgcagaggctgatgcatttctacgcagc |
398 |
Q |
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| T |
2487915 |
gatcttttaaaatattttattgaagtaacctgagtttgtaggattgctttgcaaaccaatgctgctaatatttgcagaggctgatgcatttctacgcagc |
2487816 |
T |
|
| Q |
399 |
ttagaataagatccttcagcctccctacataaac |
432 |
Q |
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| T |
2487815 |
ttagaataagatccttcagcctccctacataaac |
2487782 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 8806957 - 8806998
Alignment:
| Q |
66 |
aaagaatatgaatctaatatatgtgctaaaccaatgctataa |
107 |
Q |
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| T |
8806957 |
aaagattatgaatctaatatatgtgttaaaccaattctataa |
8806998 |
T |
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