View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_low_49 (Length: 423)
Name: NF17763_low_49
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_49 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 36407347 - 36407756
Alignment:
| Q |
1 |
atgtgtcacacacttatatcacgaaaatatacagatggatatgtatttttatgatactctaaccannnnnnnnaattgcagtggatatatgtcaccagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36407347 |
atgtgtcacacacttatatcacgaaaatatacagatggatatgtatttttatgatactctaaccattttgtttaattgcagtggatatatgtcaccagaa |
36407446 |
T |
|
| Q |
101 |
tatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36407447 |
tatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaa |
36407546 |
T |
|
| Q |
201 |
ttggaagagactccccaaatttaattggacatgtaagttacatataataaaaagagtagccttaaaattggccaacaatctaatgatgcatgacatgaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36407547 |
ttggaagagactccccaaatttaattggacatgtaagttacatataataaaaagagtagccttaaaattggccaacaatctaatgatgcatgacatgaca |
36407646 |
T |
|
| Q |
301 |
tatttatttaaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaagagccttggatattgttgatccagcactaaaccagtcttatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36407647 |
tatttatttaaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaagagccttggatattgttgatccagcactaaaccagtcttatc |
36407746 |
T |
|
| Q |
401 |
ctcctgatat |
410 |
Q |
| |
|
||| |||||| |
|
|
| T |
36407747 |
ctcttgatat |
36407756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 36412470 - 36412879
Alignment:
| Q |
1 |
atgtgtcacacacttatatcacgaaaatatacagatggatatgtatttttatgatactctaaccannnnnnnnaattgcagtggatatatgtcaccagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36412470 |
atgtgtcacacacttatatcacgaaaatatacagatggatatgtatttttatgatactctaaccattttgtttaattgcagtggatatatgtcaccagaa |
36412569 |
T |
|
| Q |
101 |
tatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36412570 |
tatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaa |
36412669 |
T |
|
| Q |
201 |
ttggaagagactccccaaatttaattggacatgtaagttacatataataaaaagagtagccttaaaattggccaacaatctaatgatgcatgacatgaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36412670 |
ttggaagagactccccaaatttaattggacatgtaagttacatataataaaaagagtagccttaaaattggccaacaatctaatgatgcatgacatgaca |
36412769 |
T |
|
| Q |
301 |
tatttatttaaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaagagccttggatattgttgatccagcactaaaccagtcttatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36412770 |
tatttatttaaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaagagccttggatattgttgatccagcactaaaccagtcttatc |
36412869 |
T |
|
| Q |
401 |
ctcctgatat |
410 |
Q |
| |
|
||| |||||| |
|
|
| T |
36412870 |
ctcttgatat |
36412879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 36399890 - 36400292
Alignment:
| Q |
1 |
atgtgtcacacacttata-tcacgaaaatatacagatggatatgtattttt-atgatactctaaccannnnnnnnaattgcagtggatatatgtcaccag |
98 |
Q |
| |
|
|||| ||| ||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| | |
|
|
| T |
36399890 |
atgtctcaaacacttataatcacgaaattatacagatggatatgtattttttatgatactctaaccattttgtataattgcagtggatacatgtcacccg |
36399989 |
T |
|
| Q |
99 |
aatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36399990 |
aatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtga |
36400089 |
T |
|
| Q |
199 |
aattggaagagactccccaaatttaattggacatgtaagttacatataataaaaagagtagccttaaaattggccaacaatctaatgatgcatgacatga |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||| || |||| |
|
|
| T |
36400090 |
aattggaagagactccccaaatttaattggacatgtaagttaaatatattaaaaagagtagccttaaaacaggcctacaatctaatgatatataacat-- |
36400187 |
T |
|
| Q |
299 |
catatttatttaaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaagagccttggatattgttgatccagcactaaaccagtctta |
398 |
Q |
| |
|
|| | |||||||||| | |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
36400188 |
-atgtatatttaaaaa--ctcttgtgcatttataggtgtggactgtatggacagaagaaagggccttggatatagttgatgaagcactaaaccagtctta |
36400284 |
T |
|
| Q |
399 |
tcctcctg |
406 |
Q |
| |
|
||| |||| |
|
|
| T |
36400285 |
tccccctg |
36400292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 74 - 392
Target Start/End: Original strand, 36419605 - 36419918
Alignment:
| Q |
74 |
aattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattg |
173 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36419605 |
aattgcagtggatatatgtctccggaatatgcaatgcaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattg |
36419704 |
T |
|
| Q |
174 |
ctggcaagagaaacacacattgtgaaattggaagagactccccaaatttaattggacatgtaagttacatataataaaaagagtagccttaaaattggcc |
273 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
36419705 |
ctggcaagagaaacacacattgtgagacaggaagagactccccaaatttaattggacatgtaagttatatataataaaaagagtggccttaaaattggcc |
36419804 |
T |
|
| Q |
274 |
aacaatctaatgatgcatgacatgacatatttatttaaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaagagccttggatattg |
373 |
Q |
| |
|
| ||| ||||| |||||| ||| || |||||||| ||| |||| ||||||| ||||||||||||||||||||||||| || |||||||||||| | |
|
|
| T |
36419805 |
gataatttaatggtgcatg--atg---tacttatttaatcattatgttatgcatttgtaggtgtggacactatggacagaaggaaaagccttggatatgg |
36419899 |
T |
|
| Q |
374 |
ttgatccagcactaaacca |
392 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
36419900 |
ttgatcaagcactaaacca |
36419918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 401
Target Start/End: Original strand, 36401206 - 36401573
Alignment:
| Q |
21 |
acgaaaatatacagatggatatgtatttttatgatactctaaccannnnnnnnaattgcagtggatatatgtcaccagaatatgcaatggaaggacgata |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36401206 |
acgaaaatatacagatggatatgtatttttatgatactctaaccattttgtttaattgcagtggatatatgtcaccagaatatgcaatggaaggacgata |
36401305 |
T |
|
| Q |
121 |
ttcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacacattgtgaaattggaagagactccccaaat |
220 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| || |||||||||||||| | ||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
36401306 |
ttcaacgaaatctgatgtctttagttatggggtcttactgctagagattattgctggtcaaagaaacacacattgtgaaacaggaagagcttccccaaat |
36401405 |
T |
|
| Q |
221 |
ttaattggacatgtaagttacatataataaaaagagtagccttaaaattggccaacaatctaatgatgcatgacatgacatatttatttaaaaattgtgt |
320 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||||||||||| ||| ||| ||| | |||| | ||| || ||||| | |||||| |
|
|
| T |
36401406 |
ttaattggacatgtaagt----tataataga---ggtagccttaaaatt-aacaataatttaacggtgca--agatg---tacttattagatttttgtgt |
36401492 |
T |
|
| Q |
321 |
tgtgcatttataggtgtggacactatggacagaagaaagagccttggatattgttgatccagcactaaaccagtcttatcc |
401 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||| |||||| |
|
|
| T |
36401493 |
tgtgcatttgtaggtatggacacagtggacagaaggaagagccttggatatagttgatccagaactaaaccagttttatcc |
36401573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 74 - 402
Target Start/End: Original strand, 36389768 - 36390099
Alignment:
| Q |
74 |
aattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattg |
173 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
36389768 |
aattgcagtggatacatgtcaccggaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggtgtcatactactagagattattg |
36389867 |
T |
|
| Q |
174 |
ctggcaagagaaacacacattgtgaaattggaagagactccccaaatttaattggacatgtaagtt-----acatataataa--aaagagtagccttaaa |
266 |
Q |
| |
|
||||| | ||||||||||||| ||||| ||||||| |||| |||||||||||||||||||||| | ||| ||||| ||| |||| ||||||| |
|
|
| T |
36389868 |
ctggccaaagaaacacacattctgaaacaggaagagcatccctgaatttaattggacatgtaagttctaaaaaataaaataaagaaaaagtatccttaaa |
36389967 |
T |
|
| Q |
267 |
attggccaacaatctaatgatgcatgacatgacatatttatttaaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaagagccttg |
366 |
Q |
| |
|
||||| | | ||| |||| || | | ||| |||| |||||| |||||||||| ||||| ||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
36389968 |
attggtcgaaaatttaatcgtg--taagatgtattatt--tttaaagattgtgttgtacatttgtaggtgtggacactatggacagaaggaagggccttg |
36390063 |
T |
|
| Q |
367 |
gatattgttgatccagcactaaaccagtcttatcct |
402 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
36390064 |
gatacagttgatccagcactaaaccagtcttatcct |
36390099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 74 - 405
Target Start/End: Original strand, 36429568 - 36429884
Alignment:
| Q |
74 |
aattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattg |
173 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
36429568 |
aattgcagcggatatatgtcaccagaatatgcaatggaaggacgatattcaacgaaatctgatgtcttcagttatggggtcatactactggagactattg |
36429667 |
T |
|
| Q |
174 |
ctggcaagagaaacacacattgtgaaattggaagagactccccaaatttaattggacatgtaagttacatataataaaaaga-gtagccttaaaattggc |
272 |
Q |
| |
|
||||| | ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| ||||| | ||||||| ||||||| |
|
|
| T |
36429668 |
ctggccaaagaaacacacattgtgaaaaaggaagagaatccccaaatttaattggacatgtaagtta-----aatagaaagaggcagccttagaattggc |
36429762 |
T |
|
| Q |
273 |
caacaatctaatgatgcatgacatgacatatttatttaaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaagagccttggatatt |
372 |
Q |
| |
|
|||| || ||| | | ||||| |||| ||| || ||| | || ||| |||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
36429763 |
caacgatttaacggtacatga-ttgacttat-------aagatttttgagt---tttgtaggtgtggagactatggacagaaggaagagccttggatata |
36429851 |
T |
|
| Q |
373 |
gttgatccagcactaaaccagtcttatcctcct |
405 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |
|
|
| T |
36429852 |
gttgatccagaactaaaccagttttatcctcct |
36429884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 36370685 - 36371091
Alignment:
| Q |
1 |
atgtgtcacacacttata-tcacgaaaatatacagatggatatgtatttttatgatactctaaccannnnnnnn--------aattgcagtggatatatg |
91 |
Q |
| |
|
|||| ||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| | || |||||||||| ||||||| |
|
|
| T |
36370685 |
atgtctcaaacacttataatcacgaaattatacagatggatatgtatttttatgatactcttaacaattttgtataatgtataattgcagtgaatatatg |
36370784 |
T |
|
| Q |
92 |
tcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattgctggcaagagaaacacac |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| | ||||||||| |
|
|
| T |
36370785 |
tcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggtgtcatactactagagattattgctggccaaagaaacacat |
36370884 |
T |
|
| Q |
192 |
attgtgaaattggaagagactccccaaatttaattggacatgtaagttacatataataaaa-agagtagccttaaaattggccaacaatctaatgatgca |
290 |
Q |
| |
|
||||||||| |||||||| || |||||||||||||||||||||||||| | | || |||| ||| || ||| ||||| || ||||||| ||||| |||| |
|
|
| T |
36370885 |
attgtgaaacaggaagagaatcaccaaatttaattggacatgtaagttataaaaaagaaaagaga-taacctaaaaatcggtcaacaatttaatggtgca |
36370983 |
T |
|
| Q |
291 |
tgacatgacatatttatttaaaaattgtgttgtgca-tttataggtgtggacactatggacagaagaaagagccttggatattgttgatccagcactaaa |
389 |
Q |
| |
|
|| ||| || || ||| || ||||||||| ||| |||| ||||||||| |||||||||| ||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
36370984 |
tg--atg---tactttagaaaattttttgttgtgcattttgtaggcgtggacactgtggacagaaggaagggccttggatatggttgatcaagcactaaa |
36371078 |
T |
|
| Q |
390 |
ccagtcttatcct |
402 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
36371079 |
ccattcttatcct |
36371091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 74 - 240
Target Start/End: Original strand, 36436030 - 36436196
Alignment:
| Q |
74 |
aattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattg |
173 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
36436030 |
aattgcagtggatatatgtcaccggaatatgcaatggaaggacgatattcaactaaatcggatgtcttcagttttggtgttttactactggagattattg |
36436129 |
T |
|
| Q |
174 |
ctggcaagagaaacacacattgtgaaattggaagagactccccaaatttaattggacatgtaagtta |
240 |
Q |
| |
|
||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36436130 |
ctggccaaagaaacacacattgtgaaacaggaagagactccccaaatttaattggacatgtaagtta |
36436196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 74 - 240
Target Start/End: Original strand, 36376532 - 36376698
Alignment:
| Q |
74 |
aattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggtcttactactggagattattg |
173 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
36376532 |
aattgcagtggatatatgtcaccggaatatgcaatggaaggacgatattcaactaaatcggatgtcttcagttttggtgttttactactggagattattg |
36376631 |
T |
|
| Q |
174 |
ctggcaagagaaacacacattgtgaaattggaagagactccccaaatttaattggacatgtaagtta |
240 |
Q |
| |
|
| ||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36376632 |
ccggccaaagaaacacacattgtgaaacaggaagagactccccaaatttaattggacatgtaagtta |
36376698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 36436263 - 36436364
Alignment:
| Q |
301 |
tatttatttaaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaagagccttggatattgttgatccagcactaaaccagtcttatc |
400 |
Q |
| |
|
|||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36436263 |
tatttatttaaagattgtgttgtacatttgtaggtgtggacactatggacagaaggaagggccttggatacagttgatccagcactaaaccagtcttatc |
36436362 |
T |
|
| Q |
401 |
ct |
402 |
Q |
| |
|
|| |
|
|
| T |
36436363 |
ct |
36436364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 301 - 401
Target Start/End: Original strand, 36376753 - 36376853
Alignment:
| Q |
301 |
tatttatttaaaaattgtgttgtgcatttataggtgtggacactatggacagaagaaagagccttggatattgttgatccagcactaaaccagtcttatc |
400 |
Q |
| |
|
|||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||||| |
|
|
| T |
36376753 |
tatttatttaaagattgtgttgtacatttgtaggtgtggacactatggacagaaggaagagccttggatatagttgatccagaactaaaccagttttatc |
36376852 |
T |
|
| Q |
401 |
c |
401 |
Q |
| |
|
| |
|
|
| T |
36376853 |
c |
36376853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 405
Target Start/End: Original strand, 36418856 - 36418893
Alignment:
| Q |
368 |
atattgttgatccagcactaaaccagtcttatcctcct |
405 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
36418856 |
atatggttgatccagcactaaaccagtcttatcttcct |
36418893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 19357642 - 19357703
Alignment:
| Q |
77 |
tgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgt |
138 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
19357642 |
tgcagtggatacatgtctccagaatatgcaatggaaggaatttgttcaacaaagtctgatgt |
19357703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 19500392 - 19500330
Alignment:
| Q |
78 |
gcagtggatatatgtcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgtct |
140 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||||| || ||||||||| ||||| |||| |
|
|
| T |
19500392 |
gcagtggatacatgtctccagaatatgccatggaaggaatatgttcaacaaagtctgacgtct |
19500330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 19339621 - 19339682
Alignment:
| Q |
77 |
tgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgt |
138 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||||||| | ||||||||| |||||||| |
|
|
| T |
19339621 |
tgcagtggatacatgtctccagaatatgccatggaaggaatttgttcaacaaagtctgatgt |
19339682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 19407651 - 19407711
Alignment:
| Q |
80 |
agtggatatatgtcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgtct |
140 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||| | ||| |||||||||||||||| |
|
|
| T |
19407651 |
agtggatacatgtctccagaatatgccatggaaggagtttgttctacaaaatctgatgtct |
19407711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 19551373 - 19551313
Alignment:
| Q |
80 |
agtggatatatgtcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgtct |
140 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||| | ||| |||||||||||||||| |
|
|
| T |
19551373 |
agtggatacatgtctccagaatatgccatggaaggagtttgttctacaaaatctgatgtct |
19551313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 19581315 - 19581375
Alignment:
| Q |
80 |
agtggatatatgtcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgtct |
140 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||| | ||| |||||||||||||||| |
|
|
| T |
19581315 |
agtggatacatgtctccagaatatgccatggaaggagtttgttctacaaaatctgatgtct |
19581375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 2712035 - 2711998
Alignment:
| Q |
77 |
tgcagtggatatatgtcaccagaatatgcaatggaagg |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
2712035 |
tgcagtggatatatgtctccagaatatgcaatgaaagg |
2711998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 482884 - 482848
Alignment:
| Q |
80 |
agtggatatatgtcaccagaatatgcaatggaaggac |
116 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| |
|
|
| T |
482884 |
agtggatatatggctccagaatatgcaatggaaggac |
482848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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