View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_low_51 (Length: 408)
Name: NF17763_low_51
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_51 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 398
Target Start/End: Original strand, 10678305 - 10678683
Alignment:
| Q |
16 |
cacatcacaatgcaagaagatgtgagaagaactttcctcaccaccaccacaaaaagcacaattctaagaagcacccggtgttaagacatttctccttgag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10678305 |
cacatcacaatgcaagaagatgtgagaagaactttcctcaccaccaccacaaaaagcacaattctaagaagcacccggtgttaagacatttctccttgag |
10678404 |
T |
|
| Q |
116 |
aaattaatctttgttgagatatgattgatctaaaaggagtttcctagagatatcaacggtctttgatgacttttaaccattaccttccaacaactacaca |
215 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10678405 |
aaattaatctttgttgggatatgat----ctagaaggagtttccttgagatatcaacggtctttgatgacttttaaccattaccttccaacaaccacaca |
10678500 |
T |
|
| Q |
216 |
ccctctccccatatttacacctgaggacatatttccaaaggatgttccccttggatcaatctccaaagtcatttaaccaatagacttaaatttaccactc |
315 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10678501 |
ccctctccccatatttacacttgaggacatatttccaaaggatgttccccttggatcaatctccaaagtcatttagccaatagacttaaatttaccactc |
10678600 |
T |
|
| Q |
316 |
taacatccctcgctccccaaaccacccttactcagctggtgaaattgcattcatgatgatcatttaaggtttacaagcctttg |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10678601 |
taacatccctcgctccccaaaccacccttactcagctggtgaaattgcattcatgatgatcatttaaggtttacaagcctttg |
10678683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 43892435 - 43892398
Alignment:
| Q |
57 |
caccaccacaaaaagcacaattctaagaagcacccggt |
94 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
43892435 |
caccaccacaaaaagcacaattcaaagaggcacccggt |
43892398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 25664052 - 25663952
Alignment:
| Q |
29 |
aagaagatgtgagaagaactttcctcaccaccaccac---aaaaagcacaattctaagaagcacccggtgttaagacatttctccttgagaaattaatct |
125 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||| |||||| ||| |
|
|
| T |
25664052 |
aagaagacatgagaagaactttcctcaccaccaccaccacaaaaagcacaattcaaagaagcatgcgg---taagacatttctccttgtcaaattagtct |
25663956 |
T |
|
| Q |
126 |
ttgt |
129 |
Q |
| |
|
|||| |
|
|
| T |
25663955 |
ttgt |
25663952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University