View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_53 (Length: 407)
Name: NF17763_low_53
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Original strand, 43755084 - 43755465
Alignment:
| Q |
11 |
cacagagttggaagaaaacagaaggtgagaggaggagacattgaactgaatggcgttgtttcgtgtcaaaccaaccaccactcttcctcgtctttcttca |
110 |
Q |
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| T |
43755084 |
cacagagttggaagaaaacagaaggtgagaggaggagacattgaactgaatggcgttgtttcgtgtcaaaccaaccaccactcttcctcgtctttcttca |
43755183 |
T |
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| Q |
111 |
acaatttcccttcgaaccaaattcgtagttcggagctgcaaccttcagttccaaagtcaacccaatgactcccaaaaggttcttctttctttcactcttt |
210 |
Q |
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| T |
43755184 |
acaatttcccttcgaaccaaattcgtagttcggagctgcaaccttcagttccaaagtcaacccaatgactcccaaaaggttcttctttctttcactcttt |
43755283 |
T |
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| Q |
211 |
tcaatgattcatttcattcctatgccaaaaacaattattcaacttacataatcaaactttcttaacttcttaaagggtatatcataatgtgattattata |
310 |
Q |
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| T |
43755284 |
tcaatgattcatttaattcctatgccaaaaacaattattcaacttacataatcaaactttcttaacttcttaaagggtatatcataatgtgattattatt |
43755383 |
T |
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| Q |
311 |
tttcttgaaaattttgcagttagttctggaagtcaaagagaggcttgaaaaagatcattatagtcttcctgttggtagaaat |
392 |
Q |
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| T |
43755384 |
tttcttgaaaattttgcagttagttctggaagtcaaagagaggcttgaaaaagatcattatagtcttcctgttggtagaaat |
43755465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 392
Target Start/End: Original strand, 43759969 - 43760122
Alignment:
| Q |
241 |
acaattattcaacttacataatcaaactttcttaacttcttaaagggtatatcataatgtgattattatatttcttg--aaaattttgcagttagttctg |
338 |
Q |
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| T |
43759969 |
acaattattcaacttacggagtgaaactctcttaacatctaaaagggtatatcaaaatgtgattacttttttgtttgttcatattttttagttaattctg |
43760068 |
T |
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| Q |
339 |
gaagtcaaagagaggcttgaaaaagatcattatagtcttcctgttggtagaaat |
392 |
Q |
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| T |
43760069 |
gaagtgaaggacaagcttgaaaaagaatattatagtcttcccgttggtagaaat |
43760122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 43759825 - 43759953
Alignment:
| Q |
85 |
ccaccactcttcctcgtctttcttcaacaatttcccttcgaaccaaattcgtagttcggagc---tgcaaccttcagttccaaagtcaacccaatgactc |
181 |
Q |
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| T |
43759825 |
ccaccactcttcctcgccttgcttcatcactttcccttggaaccaaatttgtggttcgaagctcttctaaccttcaactccaaatgcagcccaatgactc |
43759924 |
T |
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| Q |
182 |
ccaaaaggttcttctttctttcactcttt |
210 |
Q |
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| T |
43759925 |
acgcaaggttcctccttctttcactcttt |
43759953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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