View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_55 (Length: 403)
Name: NF17763_low_55
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 45066913 - 45067123
Alignment:
| Q |
24 |
aactcttccaccttaaaccctttcattttcgcaccccctcatcatcaaaacgaacctccctacgatgttccgccaccgtcccttcttcaaaacgctccta |
123 |
Q |
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| T |
45066913 |
aactcttccaccttaaaccctttcattttcgcaccccctcatcatcaaaacgaacctccctacgatgttccgccaccgtcccttcttcaaaacgctccta |
45067012 |
T |
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| Q |
124 |
caaaatcactctccttcccggcgacggcataggtcctgaagttatttccgtcgctaaagacattcttctcctcactggatctctccacggtaggtaccca |
223 |
Q |
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| T |
45067013 |
caaaatcactctccttcccggcgacggcataggtcctgaagttatttccgtcgctaaagacattcttctcctcactggatctctccacggtaggtaccca |
45067112 |
T |
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| Q |
224 |
tcattcattgc |
234 |
Q |
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||||||||||| |
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| T |
45067113 |
tcattcattgc |
45067123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 45067184 - 45067279
Alignment:
| Q |
295 |
gaattagggattaagcttgagtttcaagagaagcttttgggtggtgctgcacttgatgctactggtgttcctttacctgatgacactctctctgct |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45067184 |
gaattagggattaagcttgagtttcaagagaagcttttgggtggtgctgcacttgatgctactggtgttcctttacctgatgacactctttctgct |
45067279 |
T |
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