View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_58 (Length: 396)
Name: NF17763_low_58
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 33925648 - 33926019
Alignment:
| Q |
16 |
catacattaattctttaaatcttgttagatctaagtaaacgatgcattttccaagtttaacaatgtttcatggttaagattaaatttaaattcaaaattt |
115 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
33925648 |
catacattaattctttgaatcttgttagatctaaataaacgatacattttccagttttaacaatgttgcatgcttaagattaaatttaaattcaaaattt |
33925747 |
T |
|
| Q |
116 |
tgattaagagagaagagactcgtgtcataatctcacaccattttaattccaatatagcattattcataatcataaaattaacaaaattaaagcatgataa |
215 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33925748 |
tgattaagagagaagaaactcgtatcataatctcacaccattttaattccagtgtagcattattcataatcataaaattaacaaaattaaagcatgataa |
33925847 |
T |
|
| Q |
216 |
attgataatgagactttacaactttttgaggaattagaaagagactttatttttgtaccaaagtgggcataaaattttccaactctttctccctaatttt |
315 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33925848 |
attgataatgagactttacaac-ttttgaggaattagaaagagactttatttttgtaccaaagtgggcataaaattttccaactctttctccctaatttt |
33925946 |
T |
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| Q |
316 |
tcctttatacgcttcatcaaacggtcaacatttctcatcacacacacattataaataccctctcattcttctc |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33925947 |
tcctttatacgcttcatcaaacggtcaacatttctcatcacacacacattataaataccctctcatccttctc |
33926019 |
T |
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