View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_6 (Length: 684)
Name: NF17763_low_6
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 652; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 10 - 669
Target Start/End: Complemental strand, 2662365 - 2661706
Alignment:
| Q |
10 |
attattctatgttctgaaattgttgcagtggatacatgcctccagagtacacaatggatggacatttctctttcaaatctgatgtttatagctttggagt |
109 |
Q |
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| T |
2662365 |
attattctatgttctgaaattgttgcagtggatacatgcctccagagtacgcaatggatggacatttctctttcaaatctgatgtttatagctttggagt |
2662266 |
T |
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| Q |
110 |
tttacttttagagctattgagtggcaagaaaaacagaggattttttcaccctgatcacaagttgaatctcttaggccatgtgagtattataatgaatgcg |
209 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2662265 |
tttacttttagagctgttgagtggcaagaaaaacagaggattttttcaccctgatcacaagttgaatctcttaggccatgtgagtattataatgaatgcg |
2662166 |
T |
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| Q |
210 |
catgtatctgaaataatcaaagagtttgagaactatgcactgacagtgtaacaatcatccaatcaaattctaccatataaatgtttgccggtatagtgta |
309 |
Q |
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| T |
2662165 |
catgtatctgaaataatcaaagagtttgagaactatgcactgacagtgtaacaatcatccaatcaaattctaccatataaatgtttgccggtatagtgta |
2662066 |
T |
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| Q |
310 |
ataacaaattgacatcatagagaaatctgatcggatgaaggtgcaattaagttttacaccggcaatgcgtaatcctcaaccttatgatcaaattgcaata |
409 |
Q |
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| T |
2662065 |
ataacaaattgacatcatagagaaatctgatcggatgaaggtgcaattaagttttacaccggcaatgcgtaatcctcaaccttatgatcaaattgcaata |
2661966 |
T |
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| Q |
410 |
ttacaatatggttgtttccataaaatagttgacatattataatatgattaaatgagtaactttaatttttatgaattgaatcaattgataatgtaccatg |
509 |
Q |
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| T |
2661965 |
ttacaatatggttgtttccataaaatagttgacatattataatatgattaaatgagtaactttaatttttatgaattgaatcaattgataatgtaccatg |
2661866 |
T |
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| Q |
510 |
aaaacgtgttaggcatggaagctttggaacgaaggtaaagtcattgagttaatggatccattacttgaggatcaagtgtctacccctgaatccattttaa |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2661865 |
aaaacgtgttaggcatggaagctttggaacgaaggtaaagtcattgagttaatggatccattacttgaggatcaagtgtctacccctgaatccattttaa |
2661766 |
T |
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| Q |
610 |
agtgtattcaaataggtcttttatgtgttcaacaacatccagaagaaagaccaacaatgt |
669 |
Q |
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| T |
2661765 |
agtgtattcaaataggtcttttatgtgttcaacaacatccagaagaaagaccaacaatgt |
2661706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 5829871 - 5829949
Alignment:
| Q |
32 |
ttgcagtggatacatgcctccagagtacacaatggatggacatttctctttcaaatctgatgtttatagctttggagtt |
110 |
Q |
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| T |
5829871 |
ttgcagtggatatatgcctccagagtatgcagtgcatgggtttttctcaataaaatctgatgtttttagctttggagtt |
5829949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 5804115 - 5804192
Alignment:
| Q |
32 |
ttgcagtggatacatgcctccagagtacacaatggatggacatttctctttcaaatctgatgtttatagctttggagt |
109 |
Q |
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|||||||||||| ||||||||||| || || || ||||| ||||||| | ||||||||||||| |||||| ||||| |
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| T |
5804115 |
ttgcagtggatatatgcctccagaatatgcagtgcatggatctttctctataaaatctgatgtttttagcttcggagt |
5804192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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