View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_60 (Length: 393)

Name: NF17763_low_60
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_60
NF17763_low_60
[»] chr6 (31 HSPs)
chr6 (1-373)||(4558538-4558910)
chr6 (90-373)||(4572379-4572660)
chr6 (156-373)||(4587045-4587260)
chr6 (191-373)||(4612253-4612433)
chr6 (228-370)||(3173419-3173561)
chr6 (228-373)||(4618714-4618859)
chr6 (226-373)||(4575868-4576015)
chr6 (224-373)||(4258742-4258891)
chr6 (228-373)||(4603523-4603668)
chr6 (232-373)||(4627563-4627704)
chr6 (232-373)||(4488771-4488912)
chr6 (228-373)||(4507324-4507469)
chr6 (228-373)||(4513549-4513694)
chr6 (232-373)||(4517753-4517894)
chr6 (228-373)||(4594423-4594568)
chr6 (232-373)||(4265631-4265772)
chr6 (232-373)||(4462620-4462761)
chr6 (232-373)||(4471327-4471468)
chr6 (224-373)||(4623720-4623869)
chr6 (222-373)||(4581427-4581578)
chr6 (226-371)||(4482280-4482425)
chr6 (228-373)||(4565442-4565587)
chr6 (249-338)||(4569518-4569607)
chr6 (189-373)||(4599576-4599758)
chr6 (244-362)||(4562085-4562204)
chr6 (232-310)||(4255395-4255473)
chr6 (226-312)||(4497813-4497899)
chr6 (1-75)||(4572706-4572785)
chr6 (308-373)||(4502943-4503008)
chr6 (1-50)||(4587258-4587307)
chr6 (228-290)||(4493401-4493463)
[»] scaffold0475 (1 HSPs)
scaffold0475 (226-373)||(2237-2384)
[»] scaffold0288 (1 HSPs)
scaffold0288 (228-373)||(2021-2166)
[»] chr3 (5 HSPs)
chr3 (228-373)||(1282846-1282991)
chr3 (312-356)||(35776276-35776320)
chr3 (313-356)||(35842083-35842126)
chr3 (313-356)||(35854591-35854634)
chr3 (313-356)||(35869200-35869243)
[»] scaffold0199 (1 HSPs)
scaffold0199 (228-373)||(1171-1316)
[»] chr8 (2 HSPs)
chr8 (228-373)||(1675934-1676079)
chr8 (226-370)||(20862378-20862522)
[»] chr7 (1 HSPs)
chr7 (222-373)||(3088158-3088309)
[»] chr5 (1 HSPs)
chr5 (235-373)||(24104508-24104646)


Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 4558910 - 4558538
Alignment:
1 aactttttaatgaaaaattgttttccttctataacaaaaagtggtgacttgacaagtatgtatcaattattgtgttacatattccttagaatttgagttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
4558910 aactttttaatgaaaaattgttttccttctataacaaaaagtggtgacttgataagtatgtatcaattattgtgttacatattacttagaatttgagttt 4558811  T
101 gctttccttgtcttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcccttagctcaacattcaa 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4558810 gctttccttgacttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcccttagctcaacattcaa 4558711  T
201 acacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4558710 acacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaactt 4558611  T
301 cttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4558610 cttcaccttagaggatttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 4558538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 90 - 373
Target Start/End: Complemental strand, 4572660 - 4572379
Alignment:
90 aatttgagtttgctttccttgtcttttgtctcttatcttcttttacacaaatccaagaaacattggctttatctttattaaaccattggcttcccttagc 189  Q
    ||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| |||| |||||    
4572660 aatttgattttgctttccttgtcttttgtctct-atcttcttttccacaaatccaagaaacattggatttatctttattaaaacattggtttcc-ttagc 4572563  T
190 tcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaac 289  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
4572562 tcaacattcaaacacaaaaactcaataatgagtgataaaaaaccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaac 4572463  T
290 tagcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
4572462 tagcaaaatttcttcaccttagaggttttcacataacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagag 4572379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 156 - 373
Target Start/End: Complemental strand, 4587260 - 4587045
Alignment:
156 ctttatctttattaaaccattggcttcccttagctcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatat 255  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||||||  |||| |||||||||||  |||||| |||||||||||||| |||| |    
4587260 ctttatctctattaaaccattggcttccctttgctcaaaattcaaacacaaa--ctcagaaatgagtgattcaaaacctcatgctgtgttaatcccatct 4587163  T
256 ccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaac 355  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |||||||    
4587162 ccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgaggatttcacataacctttgtaaacactgaatacaatcacaaac 4587063  T
356 ggttgctcaagtcaagag 373  Q
    ||||||| ||||||||||    
4587062 ggttgcttaagtcaagag 4587045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 191 - 373
Target Start/End: Original strand, 4612253 - 4612433
Alignment:
191 caacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaact 290  Q
    |||||||||||||||||  |||| |||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||  | |||||    
4612253 caacattcaaacacaaa--ctcagaaatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaact 4612350  T
291 agcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    |||||||||||||||||||||||| ||||||||||| |  || ||||| |||||||| |||||||| |||||||| |||||||    
4612351 agcaaaacttcttcaccttagaggctttcacataacattcgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagag 4612433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 228 - 370
Target Start/End: Complemental strand, 3173561 - 3173419
Alignment:
228 aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc 327  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||    
3173561 aaaaccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttcactttagaggctttcacataacc 3173462  T
328 tatgtaaacactgaatacaaccacaaacggttgctcaagtcaa 370  Q
    | |||||||||||||||||| ||||||||||||||||| ||||    
3173461 tttgtaaacactgaatacaatcacaaacggttgctcaaatcaa 3173419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 228 - 373
Target Start/End: Complemental strand, 4618859 - 4618714
Alignment:
228 aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc 327  Q
    ||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||    
4618859 aaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacc 4618760  T
328 tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    | ||| ||||| |||||||| |||||||| |||||||| |||||||    
4618759 tttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagag 4618714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 226 - 373
Target Start/End: Complemental strand, 4576015 - 4575868
Alignment:
226 aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataa 325  Q
    ||||| |||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||    
4576015 aaaaagccacatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataa 4575916  T
326 cctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    ||| ||| |||||||||||||| |||||||| |||||||| |||||||    
4575915 cctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagag 4575868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 224 - 373
Target Start/End: Original strand, 4258742 - 4258891
Alignment:
224 ataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacat 323  Q
    ||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| || ||||||||| ||| ||||||||||||    
4258742 ataaaaagccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacat 4258841  T
324 aacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    ||||| ||| ||||||||||| || |||||||| |||||||| |||||||    
4258842 aacctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagag 4258891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 228 - 373
Target Start/End: Complemental strand, 4603668 - 4603523
Alignment:
228 aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc 327  Q
    ||||| |||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||    
4603668 aaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacc 4603569  T
328 tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    | ||| ||||| |||||||| |||||||| |||||||| |||||||    
4603568 tttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagag 4603523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 4627704 - 4627563
Alignment:
232 ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg 331  Q
    |||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||| | |||||||||||||| ||||||||||||| ||    
4627704 ccacatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacctttg 4627605  T
332 taaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    | |||||||||||||| |||||||| |||||||| |||||||    
4627604 tcaacactgaatacaatcacaaacgtttgctcaaatcaagag 4627563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 232 - 373
Target Start/End: Original strand, 4488771 - 4488912
Alignment:
232 ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg 331  Q
    |||||||| |||||||  |||| |||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||| ||    
4488771 ccacatgcagtgttaacaccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacctttg 4488870  T
332 taaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    | |||||||||||||| |||||||| |||||||| |||||||    
4488871 tcaacactgaatacaatcacaaacgcttgctcaaatcaagag 4488912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 228 - 373
Target Start/End: Complemental strand, 4507469 - 4507324
Alignment:
228 aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc 327  Q
    |||||||||||||||||| ||||||||||||  |||||||||||||||||||||||| |||||||| || |||||||||||| |||| ||||||||||||    
4507469 aaaaccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttcaccttcgaggctttcacataacc 4507370  T
328 tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    | ||| ||||| |||||||| |||||||| |||||||| |||||||    
4507369 tttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagag 4507324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 228 - 373
Target Start/End: Original strand, 4513549 - 4513694
Alignment:
228 aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc 327  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||| |||| | | |||||||||| |||||||||||||| ||||||||||||    
4513549 aaaaccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggctttcacataacc 4513648  T
328 tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    | ||| ||||| |||||||| |||||||| |||||||| |||||||    
4513649 tttgttaacaccgaatacaatcacaaacgtttgctcaaatcaagag 4513694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 4517894 - 4517753
Alignment:
232 ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg 331  Q
    |||||||| ||| ||| |||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||| ||    
4517894 ccacatgcagtgataactccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacctttg 4517795  T
332 taaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    | ||||| |||||||| |||||||| |||||||| |||||||    
4517794 tcaacaccgaatacaatcacaaacgtttgctcaaatcaagag 4517753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 228 - 373
Target Start/End: Complemental strand, 4594568 - 4594423
Alignment:
228 aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc 327  Q
    |||||||||||||||||| ||||||  |||| ||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||    
4594568 aaaaccacatgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacc 4594469  T
328 tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    | ||| |||||||||||||| || ||||| |||||||| |||||||    
4594468 tttgtcaacactgaatacaatcataaacgtttgctcaaatcaagag 4594423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 232 - 373
Target Start/End: Original strand, 4265631 - 4265772
Alignment:
232 ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg 331  Q
    |||||||||||||| ||||||  |||| ||||||||||||||||| ||||||| || |||| ||| ||||||||||||||||| ||||||||||||| ||    
4265631 ccacatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataacctttg 4265730  T
332 taaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    | |||||||||||||| |||||||| |||||||| |||||||    
4265731 tcaacactgaatacaatcacaaacgcttgctcaaatcaagag 4265772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 4462761 - 4462620
Alignment:
232 ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg 331  Q
    |||||||||||||| ||||||| ||||   ||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||    
4462761 ccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggttttcacataacctttg 4462662  T
332 taaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    | |||||||||||||| |||||  | |||||||| |||||||    
4462661 tcaacactgaatacaatcacaattgcttgctcaattcaagag 4462620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 4471468 - 4471327
Alignment:
232 ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg 331  Q
    ||||||||||| || ||||||| ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||    
4471468 ccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttg 4471369  T
332 taaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    | |||||||||||||| ||||||   |||||||| |||||||    
4471368 tcaacactgaatacaatcacaaagccttgctcaattcaagag 4471327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 224 - 373
Target Start/End: Complemental strand, 4623869 - 4623720
Alignment:
224 ataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacat 323  Q
    ||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||| ||| ||||||||    
4623869 ataaaaagccacatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacat 4623770  T
324 aacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    ||||| ||   |||| |||||||| |||||||| |||||||| |||||||    
4623769 aacctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagag 4623720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 222 - 373
Target Start/End: Complemental strand, 4581578 - 4581427
Alignment:
222 tgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcac 321  Q
    ||||||||| |||||||| ||||| |||||||||||| ||||||| ||||||| ||||||  | | ||||||||| ||||||||||||||||| ||||||    
4581578 tgataaaaagccacatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcaccttagaggctttcac 4581479  T
322 ataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    ||||||| ||| ||||| |||||||| |||||||| |||||||| |||||||    
4581478 ataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagag 4581427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 226 - 371
Target Start/End: Complemental strand, 4482425 - 4482280
Alignment:
226 aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataa 325  Q
    |||||||||||||| ||||| | ||||| ||||| |||||||||||||||| ||||||||||| ||| |||||| |||||||||||||| ||||||||||    
4482425 aaaaaaccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttcaccttagaggctttcacataa 4482326  T
326 cctatgtaaacactgaatacaaccacaaacggttgctcaagtcaag 371  Q
    ||| ||| ||||| |||||||| |||||||| ||||| || |||||    
4482325 cctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaag 4482280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 228 - 373
Target Start/End: Complemental strand, 4565587 - 4565442
Alignment:
228 aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc 327  Q
    |||||||||||||||||| ||||||  |||| ||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||    
4565587 aaaaccacatgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacc 4565488  T
328 tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    | ||| |||||||||||||| || ||||| ||||| || |||||||    
4565487 tttgtcaacactgaatacaatcataaacgattgctaaaatcaagag 4565442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 249 - 338
Target Start/End: Complemental strand, 4569607 - 4569518
Alignment:
249 tccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatgtaaacac 338  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||    
4569607 tccatatccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacac 4569518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 189 - 373
Target Start/End: Complemental strand, 4599758 - 4599576
Alignment:
189 ctcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaa 288  Q
    |||||||||||||||||||  |||| ||||||||| |||||||| |||||| || || |||||||  ||| |||||||  ||||||||| |||  | |||    
4599758 ctcaacattcaaacacaaa--ctcacaaatgagtggtaaaaaactacatgcagtattgattccattaccaattcaaggaaatatcaatctattaatcaaa 4599661  T
289 ctagcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    ||||||||  |||||||||||||||| ||| |||||||||  || ||||| || ||||| |||||||| |||||||| |||||||    
4599660 ctagcaaagattcttcaccttagaggattttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagag 4599576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 244 - 362
Target Start/End: Complemental strand, 4562204 - 4562085
Alignment:
244 ttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacat-aacctatgtaaacactgaa 342  Q
    |||| ||||| |||||||||||| ||||||||| ||||||||||| |||||||||| |||||||| ||||| |||||||| ||||| ||| |||||||||    
4562204 ttaactccatttccagttcaaggtcatatcaatgcattgttgaaaatagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaa 4562105  T
343 tacaaccacaaacggttgct 362  Q
    ||||| |||||||| |||||    
4562104 tacaatcacaaacgtttgct 4562085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 4255395 - 4255473
Alignment:
232 ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcacctta 310  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||| | ||||| ||||    
4255395 ccacatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatctta 4255473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 4497813 - 4497899
Alignment:
226 aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttaga 312  Q
    ||||| |||||||| ||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||| | ||||||||||||    
4497813 aaaaagccacatgcagtgttaactccatttccaatttaaggccatatcaatccattgttgaaactaggaaaattacttcaccttaga 4497899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4572785 - 4572706
Alignment:
1 aactttttaatgaaaaattgttttccttctat-----aacaaaaagtggtgacttgacaagtatgtatcaattattgtgt 75  Q
    |||||||||||||||||||||||||||||| |     ||||||||||||||||||||| |||||| ||||||||||||||    
4572785 aactttttaatgaaaaattgttttccttctctcacgtaacaaaaagtggtgacttgactagtatgcatcaattattgtgt 4572706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 4502943 - 4503008
Alignment:
308 ttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    ||||||| ||||||||||||| ||| ||||| |||||||| |||||||| |||||||| |||||||    
4502943 ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagag 4503008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4587307 - 4587258
Alignment:
1 aactttttaatgaaaaattgttttccttctataacaaaaagtggtgactt 50  Q
    |||||||||||||||||||| ||||||| |||||||||||||||| ||||    
4587307 aactttttaatgaaaaattgatttccttttataacaaaaagtggtcactt 4587258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 4493463 - 4493401
Alignment:
228 aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaact 290  Q
    |||||||||||| ||||| ||||||| ||||| |||||| ||||||||| || || |||||||    
4493463 aaaaccacatgcagtgttgattccatttccagctcaaggtcatatcaatgcaatgctgaaact 4493401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 226 - 373
Target Start/End: Complemental strand, 2384 - 2237
Alignment:
226 aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataa 325  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||    
2384 aaaaaaccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggctttcacataa 2285  T
326 cctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    ||| ||| |||||||||||||| || ||||| |||||||| |||||||    
2284 cctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagag 2237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 228 - 373
Target Start/End: Original strand, 2021 - 2166
Alignment:
228 aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc 327  Q
    ||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||    
2021 aaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacc 2120  T
328 tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    | ||| |||||||||||||| || ||||| |||||||| |||||||    
2121 tttgtcaacactgaatacaatcataaacgcttgctcaaatcaagag 2166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 228 - 373
Target Start/End: Complemental strand, 1282991 - 1282846
Alignment:
228 aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc 327  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| ||||||||    
1282991 aaaaccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacc 1282892  T
328 tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    | ||| || ||||||||||| |||||||| |||||||| |||||||    
1282891 tttgttaatactgaatacaatcacaaacgcttgctcaaatcaagag 1282846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 35776320 - 35776276
Alignment:
312 aggttttcacataacctatgtaaacactgaatacaaccacaaacg 356  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||    
35776320 aggttttcacataacctttgtgaacactgaattcaaccacaaacg 35776276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 35842126 - 35842083
Alignment:
313 ggttttcacataacctatgtaaacactgaatacaaccacaaacg 356  Q
    |||||||||||||||| ||| |||||||||| ||||||||||||    
35842126 ggttttcacataacctttgtgaacactgaattcaaccacaaacg 35842083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 35854634 - 35854591
Alignment:
313 ggttttcacataacctatgtaaacactgaatacaaccacaaacg 356  Q
    |||||||||||||||| ||| |||||||||| ||||||||||||    
35854634 ggttttcacataacctttgtgaacactgaattcaaccacaaacg 35854591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 35869243 - 35869200
Alignment:
313 ggttttcacataacctatgtaaacactgaatacaaccacaaacg 356  Q
    |||||||||||||||| ||| |||||||||| ||||||||||||    
35869243 ggttttcacataacctttgtgaacactgaattcaaccacaaacg 35869200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 228 - 373
Target Start/End: Complemental strand, 1316 - 1171
Alignment:
228 aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc 327  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||  |||||    
1316 aaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacc 1217  T
328 tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    ||||| |||||||||||||| |||||||| |||||||| |||||||    
1216 tatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagag 1171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 228 - 373
Target Start/End: Complemental strand, 1676079 - 1675934
Alignment:
228 aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc 327  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||  |||||    
1676079 aaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacc 1675980  T
328 tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    ||||| |||||||||||||| |||||||| |||||||| |||||||    
1675979 tatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagag 1675934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 226 - 370
Target Start/End: Original strand, 20862378 - 20862522
Alignment:
226 aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataa 325  Q
    |||||||||||||| ||||||| |||||||||| ||||||| |||||||||||| |||| |||||||||||||| |||||||||||||| ||| ||||||    
20862378 aaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataa 20862477  T
326 cctatgtaaacactgaatacaaccacaaacggttgctcaagtcaa 370  Q
    | | ||| || ||||||||||| |||||||| ||||| |||||||    
20862478 catttgtcaatactgaatacaatcacaaacgcttgcttaagtcaa 20862522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 222 - 373
Target Start/End: Complemental strand, 3088309 - 3088158
Alignment:
222 tgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcac 321  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||    
3088309 tgataaaaagccacatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcac 3088210  T
322 ataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    ||||||| ||| || || |||||||| ||||| || ||||| || |||||||    
3088209 ataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagag 3088158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 235 - 373
Target Start/End: Complemental strand, 24104646 - 24104508
Alignment:
235 catgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatgtaa 334  Q
    ||||||||||| ||||||  |||| ||||||| ||||||||| ||||||| ||||||| ||| ||||||||||||||||| |||||||||||||  || |    
24104646 catgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataaccttcgtga 24104547  T
335 acactgaatacaaccacaaacggttgctcaagtcaagag 373  Q
    |||| |||||||| |||||||| |||||| | |||||||    
24104546 acaccgaatacaatcacaaacgcttgctcgaatcaagag 24104508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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