View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_62 (Length: 385)
Name: NF17763_low_62
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_62 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 186 - 375
Target Start/End: Complemental strand, 6348129 - 6347940
Alignment:
| Q |
186 |
tgataatattttaagaaaatataatcatatgtgttggtgtcgtcgtatatcaaacatcagacccattgatatgaagtgtctatctttagattgaatagta |
285 |
Q |
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| T |
6348129 |
tgataatattttaagaaaatgtaatcatatgtgtcggtgttgtcgcatgtcagacatcagacccattaatatgaagtgtcaatctttaaattgaatggta |
6348030 |
T |
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| Q |
286 |
tgtagcattgacgcatacatagacaacatatatgatattgacactaacacgtagacaattgaaatatttaaagaaaatgtaagagaataa |
375 |
Q |
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| T |
6348029 |
tgtagcattgacgcatacatagacaacatatatgatattgacaccgatacgtagacattggaaatatttcaagaaaatgtatgcgaataa |
6347940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 182 - 368
Target Start/End: Complemental strand, 6325910 - 6325729
Alignment:
| Q |
182 |
acactgataatattttaagaaaatataatcatatgtgttggtgtcgtcgtatatcaaacatcagacccattgatatgaagtgtctatctttagattgaat |
281 |
Q |
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| T |
6325910 |
acactgataatattttaagaaaatgtaatcatatgtgttggtgtcgtcgcatgccggacatc-----cattaatatgaagtgtcaatctttagattgaat |
6325816 |
T |
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| Q |
282 |
agtatgtagcattgacgcatacatagacaacatatatgatattgacactaacacgtagacaattgaaatatttaaagaaaatgtaag |
368 |
Q |
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| T |
6325815 |
ggtatgtagcattgatacatacatagacaacatatatgatattgacactgacacgtagacattagaaatatttcaagaaaatataag |
6325729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 182 - 368
Target Start/End: Complemental strand, 6332866 - 6332685
Alignment:
| Q |
182 |
acactgataatattttaagaaaatataatcatatgtgttggtgtcgtcgtatatcaaacatcagacccattgatatgaagtgtctatctttagattgaat |
281 |
Q |
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| T |
6332866 |
acactgataatattttaagaaaatgtaatcatatgtgttggtgtcgtcgcatgccggacatc-----cattaatatgaagtgtcaatctttagattgaat |
6332772 |
T |
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| Q |
282 |
agtatgtagcattgacgcatacatagacaacatatatgatattgacactaacacgtagacaattgaaatatttaaagaaaatgtaag |
368 |
Q |
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| T |
6332771 |
ggtatgtagcattgatacatacatagacaacatatatgatattgacactgacacgtagacattagaaatatttcaagaaaatataag |
6332685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 6348201 - 6348153
Alignment:
| Q |
171 |
aaataacatttacactgataatattttaagaaaatataatcatatgtgt |
219 |
Q |
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| T |
6348201 |
aaataatatttacactgataatattttaagaaaatgtaatcatatgtgt |
6348153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 6326101 - 6326061
Alignment:
| Q |
18 |
gttcttgctacacacaacattgaatcaggtaataattagat |
58 |
Q |
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| T |
6326101 |
gttcttgctacacacaacattgaatcaggtactaattagat |
6326061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 6333057 - 6333017
Alignment:
| Q |
18 |
gttcttgctacacacaacattgaatcaggtaataattagat |
58 |
Q |
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| T |
6333057 |
gttcttgctacacacaacattgaatcaggtactaattagat |
6333017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 6348337 - 6348231
Alignment:
| Q |
18 |
gttcttgctacacacaacattgaatcaggtaataattagatatatttacattcattaggnnnnnnnnnccttttcaatttcatattatttagggtttata |
117 |
Q |
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| T |
6348337 |
gttcttgctacacacaacattgaatcaggtacttattag--atattta-attcattaggttttttttttcttttcaatatcatattttttagactttata |
6348241 |
T |
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| Q |
118 |
gagtaatgta |
127 |
Q |
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|| ||||||| |
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| T |
6348240 |
gaataatgta |
6348231 |
T |
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