View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_69 (Length: 370)
Name: NF17763_low_69
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 23828354 - 23828018
Alignment:
| Q |
19 |
ccaaccactaatgaaattagcttagttgagaaacattgataagattaaactagtaaaaatattctcaaacatgaagcgtaagtgtttatgctataaacgc |
118 |
Q |
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| T |
23828354 |
ccaaccactaatgaaattagcttagttgagaaacattgataagattaaactagtaaaaatattctcaaacatgaagcgtaagtgtttatgctataaacgc |
23828255 |
T |
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| Q |
119 |
ttaatgagtaataataattgcatactgcgtaaaatagcagtttagtcaaattttgttacactaaatgttatagcaccactttgtactaaatagtgtatca |
218 |
Q |
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| T |
23828254 |
ttaatgtgtaataataattgcatactgcggaaaatagcggtttagtcaaattttgttacactaaatgttatagcaccactttgtactaaatagtgtatca |
23828155 |
T |
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| Q |
219 |
cattataatagcgatttattcaaattcaactatgctattgcgccgctatagcatctatttgacaacaccgcaacagttacactattttcttcttagttat |
318 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23828154 |
cataataatagcgatttattcaaattcagctatgctattgcgccgctatagcatctatttgacaacagcgcaacagttacactattttcttcttagttat |
23828055 |
T |
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| Q |
319 |
aagagttaaacttaccatgaactcgttgtgacctttg |
355 |
Q |
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| T |
23828054 |
aagagttaaacttaccatgaacttgttgtgacctttg |
23828018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 23824223 - 23824163
Alignment:
| Q |
223 |
ataatagcgatttattcaaattcaactatgctattgcgccgctatagcatctatttgacaa |
283 |
Q |
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| T |
23824223 |
ataatagcaatttgttcaaattcagctaagctatagcgccactatagccgctatttgacaa |
23824163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 33342776 - 33342727
Alignment:
| Q |
196 |
actttgtactaaatagtgtatcacattataatagcgatttattcaaattc |
245 |
Q |
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| T |
33342776 |
actttgtacttaatagtgtatcgcataacaatagcgatttattcaaattc |
33342727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 507809 - 507723
Alignment:
| Q |
200 |
tgtactaaatagtgtatcacattataatagcgatttattcaaattcaactatgctattgcgccgctatagcatctatttgacaacac |
286 |
Q |
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| T |
507809 |
tgtactaaattgtgtatcacataacaatagcagtttattataattccgctatgctatagcgccactaaatcaactatttgacaacac |
507723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 7180716 - 7180761
Alignment:
| Q |
196 |
actttgtactaaatagtgtatcacattataatagcgatttattcaa |
241 |
Q |
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| T |
7180716 |
actttgtactaaatagtgtatcacagaacaatagcaatttattcaa |
7180761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 25314042 - 25314103
Alignment:
| Q |
195 |
cactttgtactaaatagtgtatcacattataatagcgatttattcaaattcaactatgctat |
256 |
Q |
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|||||||||| ||||||||||||||| | |||| |||||| ||||||||| ||||||||| |
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| T |
25314042 |
cactttgtaccaaatagtgtatcacagaacaataacgatttgttcaaattcctctatgctat |
25314103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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