View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_70 (Length: 370)

Name: NF17763_low_70
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_70
NF17763_low_70
[»] chr5 (6 HSPs)
chr5 (21-360)||(39162406-39162747)
chr5 (187-297)||(36032257-36032367)
chr5 (203-358)||(29794469-29794622)
chr5 (187-249)||(28034388-28034450)
chr5 (128-170)||(29794645-29794687)
chr5 (73-109)||(29794753-29794789)
[»] chr7 (3 HSPs)
chr7 (73-261)||(19863912-19864097)
chr7 (128-251)||(25854136-25854259)
chr7 (178-244)||(25871216-25871282)
[»] chr2 (1 HSPs)
chr2 (189-360)||(21374908-21375076)
[»] chr1 (2 HSPs)
chr1 (189-296)||(36495680-36495787)
chr1 (132-160)||(36496257-36496285)
[»] chr4 (1 HSPs)
chr4 (199-252)||(29172155-29172208)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 360
Target Start/End: Original strand, 39162406 - 39162747
Alignment:
Q  21 acaatcttagataaaagctaaaaagaggtcacgttatatacat--gtttcacaatccaagaaaatcatgattttacccttaaaatttgaaccgtctaaag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39162406 acaatcttagataaaagctaaaaagaggtcacgttatatacatatgtttcacaatccaagaaaatcatgattttacccttaaaatttgaaccgtctaaag 39162505  T
Q  119 agcaatttaccgttttcaaccctaaaccctttcattcattacatgttctctgnnnnnnnatcatatggttttttgtttgttacattggaatcagctacta 218  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  39162506 agaaatttaccgttttcaaccctaaaccctttcattcattacatgttctctgtttttttatcatatggttttttgtttgttacattggaatcagctacta 39162605  T
Q  219 cttgaatagacaataaaagacacattcaatctctcctctgttagattaaatctctaactagtaattgttttatcatatannnnnnngttctcctctgttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  39162606 cttgaatagacaataaaagacacattcaatctctcctctgttacattaaatctctaactagtaattgttttatcatatatttttttgttctcctctgttt 39162705  T
Q  319 gtaatacattctctcctctgttcttatacaatctatcctttg 360  Q
     |||||||||||||||||||||||||||||||||||||||||    
T  39162706 ttaatacattctctcctctgttcttatacaatctatcctttg 39162747  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 36032257 - 36032367
Alignment:
Q  187 ttttttgtttgttacattggaatcagctactacttgaatagacaataaaagacacattcaatctctcctctgttagattaaatctctaactagtaattgt 286  Q
    |||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  36032257 ttttttgtttattacattggaattagctactacttgaatagacattaaaagacacattgaatctctcctcagttacattgaatctctaactagtaattgt 36032356  T
Q  287 tttatcatata 297  Q
    |||||||||||    
T  36032357 tttatcatata 36032367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 358
Target Start/End: Complemental strand, 29794622 - 29794469
Alignment:
Q  203 ttggaatcagctactacttgaatagacaataaaagacacattcaatctctcctctgttagattaaatctctaactagtaattgttttatcatat-annnn 301  Q
    ||||||||| ||||||||||||||||||  |||||||| ||| ||||||||  |||||| ||| |||||||||||| |||||| ||||||||||          
T  29794622 ttggaatcatctactacttgaatagacatgaaaagacatattgaatctctc--ctgttacattgaatctctaactaataattgctttatcatatgtattt 29794525  T
Q  302 nnngttctcctctgtttgtaatacattctctcctctgttcttatacaatctatcctt 358  Q
       |||||| ||||||| | ||||| |||||||||| ||||||||||||||||||||    
T  29794524 tttgttctcttctgttt-ttatacaatctctcctctattcttatacaatctatcctt 29794469  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 28034388 - 28034450
Alignment:
Q  187 ttttttgtttgttacattggaatcagctactacttgaatagacaataaaagacacattcaatc 249  Q
    |||||||||||||||||| | || |||||||||| ||||||||| ||||||||||||| ||||    
T  28034388 ttttttgtttgttacatttgtataagctactactagaatagacattaaaagacacattgaatc 28034450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 29794687 - 29794645
Alignment:
Q  128 ccgttttcaaccctaaaccctttcattcattacatgttctctg 170  Q
    |||||||||||||||||||||||| || |||||||| ||||||    
T  29794687 ccgttttcaaccctaaaccctttcgttgattacatgctctctg 29794645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 29794789 - 29794753
Alignment:
Q  73 tccaagaaaatcatgattttacccttaaaatttgaac 109  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  29794789 tccaagaaaatcgtgattttgcccttaaaatttgaac 29794753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 73 - 261
Target Start/End: Complemental strand, 19864097 - 19863912
Alignment:
Q  73 tccaagaaaatcatgattttacccttaaaatttgaaccgtctaaagagcaatttaccgttttcaaccctaaaccctttcattcattacatgttctctgnn 172  Q
    ||||||||||||| |||| ||||||| ||||||||||||| | ||| ||||||| | ||||||||| | |||||||| ||||||||||||||||| |       
T  19864097 tccaagaaaatcacgattgtacccttgaaatttgaaccgtttgaagggcaattt-cggttttcaactccaaacccttccattcattacatgttctgt-tt 19864000  T
Q  173 nnnnnatcatatggttttttgtttgttacattggaatcagctactacttgaatagacaataaaagacacattcaatctctcctctgtta 261  Q
         ||| |||| |||||||||||||||| |||||||||||||||| | |||||||| |||||||||| || ||||||||||||||||    
T  19863999 tttttatcgtatgtttttttgtttgttacagtggaatcagctactacat-aatagacattaaaagacacgttgaatctctcctctgtta 19863912  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 128 - 251
Target Start/End: Complemental strand, 25854259 - 25854136
Alignment:
Q  128 ccgttttcaaccctaaaccctttcattcattacatgttctctgnnnnnnnatcatatggttttttgtttgttacattggaatcagctactacttgaatag 227  Q
    ||||||||||||||||| |||||||||||| ||||||||||||        | | |||  ||||||||||||||| || ||||| ||||||||||||||     
T  25854259 ccgttttcaaccctaaatcctttcattcatcacatgttctctggttttttttaacatgtgtttttgtttgttacaatgaaatcaactactacttgaatat 25854160  T
Q  228 acaataaaagacacattcaatctc 251  Q
    ||| ||||||||||||| ||||||    
T  25854159 acattaaaagacacatttaatctc 25854136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 25871282 - 25871216
Alignment:
Q  178 atcatatggttttttgtttgttacattggaatcagctactacttgaatagacaataaaagacacatt 244  Q
    |||||||| |||||||||||| ||| |||||||| |||||||||||||| |||  ||||||||||||    
T  25871282 atcatatgtttttttgtttgtgacaatggaatcaactactacttgaatatacatcaaaagacacatt 25871216  T

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Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 189 - 360
Target Start/End: Complemental strand, 21375076 - 21374908
Alignment:
Q  189 ttttgtttgttaca-ttggaatcagctactacttgaatagacaataaaagacacattcaatctctcctctgttagattaaatctctaactagtaattgtt 287  Q
    |||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||| |||||||||||||||||||||    
T  21375076 ttttttttgttacaattggtatcagctactacttgaatagacattaaaagacacattaaatctctcctatgttacattgaatctctaactagtaattgtt 21374977  T
Q  288 ttatcatatannnnnnngttctcctctgtttgtaatacattctctcctctgttcttatacaatctatcctttg 360  Q
    ||||| |||        |||||      ||| | ||||| |||||||||||||||||||||||||||||||||    
T  21374976 ttatcgtatctatttttgttct----gtttttttatacaatctctcctctgttcttatacaatctatcctttg 21374908  T

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Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 189 - 296
Target Start/End: Complemental strand, 36495787 - 36495680
Alignment:
Q  189 ttttgtttgttacattggaatcagctactacttgaatagacaataaaagacacattcaatctctcctctgttagattaaatctctaactagtaattgttt 288  Q
    |||| ||||||||||||||||||||| |||||||||| || | ||||||||||||| |||| ||||||||||| ||  |||||||||||||||||| |||    
T  36495787 ttttttttgttacattggaatcagctcctacttgaatggatattaaaagacacattgaatcactcctctgttacatcgaatctctaactagtaatttttt 36495688  T
Q  289 tatcatat 296  Q
    ||||||||    
T  36495687 tatcatat 36495680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 36496285 - 36496257
Alignment:
Q  132 tttcaaccctaaaccctttcattcattac 160  Q
    |||||||||||||||||||||||||||||    
T  36496285 tttcaaccctaaaccctttcattcattac 36496257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 29172155 - 29172208
Alignment:
Q  199 tacattggaatcagctactacttgaatagacaataaaagacacattcaatctct 252  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| |||||||    
T  29172155 tacattggaatcagctactacttgaatagacattaaaagatgcattgaatctct 29172208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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