View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_71 (Length: 368)
Name: NF17763_low_71
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 4 - 352
Target Start/End: Complemental strand, 54221026 - 54220678
Alignment:
| Q |
4 |
acaagtatatcaatttgtttgttggtagagtggtggtaggttagggtttagagattagcaatgataatctgaaattaacaattaattaatacaccaataa |
103 |
Q |
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| T |
54221026 |
acaagtatatcaatttgtttgttggtagagtggtggtaggttagggtttagagattagcaatgataatctgaaattaacaattaataaatacaccaataa |
54220927 |
T |
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| Q |
104 |
gttgtgtggttgatcacttgcaatgagtttctgttgatatagttccagtaatttttccatacggttgcattcatcccatcagcctcaaatcgcagtcacc |
203 |
Q |
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| T |
54220926 |
gttgtgtggttgatcacttgcaatgagtttctgttgatatagttccagtaatttttccatacggttgcattcatcccatcagcctcaaatcgcagtcacc |
54220827 |
T |
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| Q |
204 |
caaccagtgaccatctgattcgatccagatcatacagacagtccaaaaattacgtatttttagttctnnnnnnnnttaaaattgtccgctttgaactcta |
303 |
Q |
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| T |
54220826 |
caaccagtgaccatctgattcgatccagatcatacagacagtccaaaaattacgtatttttagttctaaaaaaaattaaaattgtcggctttgaactctg |
54220727 |
T |
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| Q |
304 |
aaccgaccgtttgatcttaatcgatcgatcaagaatcgttgattgcgtg |
352 |
Q |
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| T |
54220726 |
aaccgaccgtttgatcttaatcgatcgatcaagaattgttgattgcgtg |
54220678 |
T |
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