View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_74 (Length: 355)
Name: NF17763_low_74
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_74 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 5 - 355
Target Start/End: Original strand, 48839133 - 48839482
Alignment:
| Q |
5 |
ttaacttaatgcatgatttgtggatactcatattcttgg---acatgtcacattttctctttatattgataactcggttcaatgccgatgcatagctagc |
101 |
Q |
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| T |
48839133 |
ttaacttaatgcttgatttatggatactcatattttttgtagacatgtcacatgttctctttatattgataactcggttcaatgccgatgcatagctagc |
48839232 |
T |
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| Q |
102 |
tagccagctaccaaagaatatcttgttagtgtggactctaaggtagataatggttagttggctacaaattataaatgttaggaggcagcagggaacctgt |
201 |
Q |
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| T |
48839233 |
tagc----taccaaagaatatcttgttagtgtggactctaaggtagataatggttagttggctacaaattataaatgttaggaggcagcagggaacctgt |
48839328 |
T |
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| Q |
202 |
actgagggttttgtcagtagtcagaagataacagtacatgttttaaaccacaagtagcagaaatactggatatgctgaaaattatattcttaatttcaac |
301 |
Q |
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| T |
48839329 |
actgagggttttgtcagtagtcagaagataatagtacatgttttaaaccacaagtagcagaaatactggatatgctgaaaattatattcttaatttcaac |
48839428 |
T |
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| Q |
302 |
agtcctgtatattttgtttgaaataattgcagtctttcgaagaaagtctagcaa |
355 |
Q |
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| T |
48839429 |
agtcctgtatattttgtttgaaataattgcagtctatcgaagaaagtctagcaa |
48839482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 50905652 - 50905695
Alignment:
| Q |
309 |
tatattttgtttgaaataattgcagtctttcgaagaaagtctag |
352 |
Q |
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| T |
50905652 |
tatatttcgttttaaataattgcagtcttttgaagaaagtctag |
50905695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 346
Target Start/End: Complemental strand, 38043293 - 38043223
Alignment:
| Q |
276 |
ctgaaaattatattcttaatttcaacagtcctgtatattttgtttgaaataattgcagtctttcgaagaaa |
346 |
Q |
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| T |
38043293 |
ctgaaaattgaatttttaatttcaacatacctatatatttcgttttaaataattgtagtcttttgaagaaa |
38043223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 355
Target Start/End: Complemental strand, 50914461 - 50914400
Alignment:
| Q |
293 |
aatttcaacagtcctgtatattttgtttgaaataattgcagtctttcgaagaaagtctagcaa |
355 |
Q |
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| T |
50914461 |
aatttcaacggtcct-tatatttagtttaaaataattgcagtcttttgaggaaagtcaagcaa |
50914400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 3070952 - 3071098
Alignment:
| Q |
44 |
acatgtcacattttctctttatattgataactcggttcaatgccgatgcatagctagctagccagctaccaaagaatatcttgttagtgtggactctaag |
143 |
Q |
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| T |
3070952 |
acatgtcacattatctcttcatattgttaacacagttcaatgccaatgcatagctagcta--------ccaaaaattctattgtcaatgtgcattctaag |
3071043 |
T |
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| Q |
144 |
gtagataatggttagttggctacaaattataaatgttaggaggcagcagggaacc |
198 |
Q |
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| T |
3071044 |
gcagataatggtaagttggctacaaatcataaatgttaggaggcaacagggaacc |
3071098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 3071225 - 3071287
Alignment:
| Q |
293 |
aatttcaacagtcctgtatattttgtttgaaataattgcagtctttcgaagaaagtctagcaa |
355 |
Q |
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| T |
3071225 |
aatttcaaaagtcctatatgttttgttttaaataattgcagtcttttgaataaagtctagcaa |
3071287 |
T |
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