View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_78 (Length: 340)
Name: NF17763_low_78
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 28905594 - 28905862
Alignment:
| Q |
1 |
gaaataaaaataagagctttttataaaagcttcaactcaagtaggttgatgaagagtagtagtagctaaagaaaagcgaaattacagaaaatgtgaatgt |
100 |
Q |
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| T |
28905594 |
gaaataaaaataagagctttttataaaagcttcaactcaagtaggttgatgaagagtagtagtagctgaagaaaagcgaaattacagaaaatgtgaatgt |
28905693 |
T |
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| Q |
101 |
tggattttacagaatgaaacaaaatcgtaaagctaagaaactagtacnnnnnnnnnnnnnnnnnnnncagtgtaagttgaacgaatgaaaaaatgagaga |
200 |
Q |
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| T |
28905694 |
tggattttacagaatgaaacaaaatcgtaaagctaagaaactagtacattattatttattattattacagtgtaagttgaacgaatgaaaaaatgagaga |
28905793 |
T |
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| Q |
201 |
agatgaaaggaaaatgtaggtaccttgtagtgaacgtttaaagcgtaaacgaaggtgtaaatgaaaatg |
269 |
Q |
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| T |
28905794 |
agaagagaggaaaatgtaggtaccttgtagtgaacgtttaaagcgtaatcgaaggtgtaaatgaaaatg |
28905862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28938917 - 28938959
Alignment:
| Q |
1 |
gaaataaaaataagagctttttataaaagcttcaactcaagta |
43 |
Q |
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| T |
28938917 |
gaaataaaaatgagaggtttttaaaaaagcttcaactcaagta |
28938959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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