View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_80 (Length: 339)

Name: NF17763_low_80
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_80
NF17763_low_80
[»] chr3 (24 HSPs)
chr3 (5-332)||(55301677-55302004)
chr3 (1-251)||(49199254-49199505)
chr3 (1-251)||(43403530-43403780)
chr3 (1-252)||(6095389-6095635)
chr3 (1-252)||(43401586-43401837)
chr3 (16-251)||(54593850-54594086)
chr3 (1-201)||(46860606-46860804)
chr3 (14-201)||(36018993-36019178)
chr3 (1-201)||(41819363-41819559)
chr3 (16-203)||(30236271-30236458)
chr3 (21-225)||(31340042-31340240)
chr3 (20-209)||(47304401-47304591)
chr3 (1-117)||(4570084-4570202)
chr3 (16-203)||(46173503-46173688)
chr3 (16-117)||(40913439-40913544)
chr3 (3-80)||(26323027-26323105)
chr3 (191-251)||(4570210-4570272)
chr3 (54-191)||(5270557-5270689)
chr3 (168-248)||(34491480-34491557)
chr3 (168-252)||(40913566-40913647)
chr3 (15-68)||(49229607-49229660)
chr3 (168-201)||(5433786-5433819)
chr3 (217-257)||(9581619-9581658)
chr3 (5-92)||(20937792-20937880)
[»] chr4 (40 HSPs)
chr4 (16-252)||(40632591-40632826)
chr4 (1-251)||(2209846-2210096)
chr4 (1-253)||(50673636-50673883)
chr4 (1-201)||(41964548-41964743)
chr4 (1-202)||(12073524-12073721)
chr4 (1-201)||(379512-379710)
chr4 (1-253)||(41639558-41639803)
chr4 (1-143)||(26699337-26699478)
chr4 (1-117)||(6656088-6656203)
chr4 (1-156)||(33989977-33990131)
chr4 (3-202)||(35662575-35662767)
chr4 (1-108)||(46703633-46703740)
chr4 (40-200)||(55085286-55085439)
chr4 (1-113)||(8648271-8648382)
chr4 (1-113)||(8665540-8665651)
chr4 (1-251)||(50262487-50262737)
chr4 (16-121)||(54883166-54883273)
chr4 (3-141)||(12119673-12119815)
chr4 (16-117)||(27416886-27416987)
chr4 (24-116)||(26364390-26364483)
chr4 (3-83)||(38811144-38811225)
chr4 (60-201)||(46703739-46703879)
chr4 (4-139)||(22882652-22882785)
chr4 (4-139)||(22934316-22934449)
chr4 (168-251)||(6656222-6656305)
chr4 (5-92)||(3786097-3786185)
chr4 (167-252)||(21688538-21688621)
chr4 (3-118)||(33090013-33090129)
chr4 (5-89)||(34112952-34113034)
chr4 (133-201)||(54881566-54881629)
chr4 (1-48)||(5350040-5350087)
chr4 (5-44)||(21703829-21703868)
chr4 (1-48)||(24969797-24969843)
chr4 (47-149)||(32091618-32091719)
chr4 (168-202)||(41961691-41961725)
chr4 (3-92)||(44570307-44570397)
chr4 (5-83)||(35369405-35369479)
chr4 (9-101)||(6199804-6199899)
chr4 (16-48)||(6542169-6542201)
chr4 (193-252)||(48143362-48143418)
[»] chr1 (25 HSPs)
chr1 (1-251)||(13548792-13549036)
chr1 (16-232)||(37876573-37876788)
chr1 (1-201)||(28242436-28242635)
chr1 (1-251)||(11348830-11349080)
chr1 (5-235)||(37032873-37033104)
chr1 (1-201)||(47115304-47115502)
chr1 (1-254)||(13546883-13547125)
chr1 (1-234)||(47255148-47255376)
chr1 (1-209)||(29136379-29136585)
chr1 (1-198)||(37168430-37168622)
chr1 (3-198)||(31925553-31925741)
chr1 (2-201)||(7482064-7482265)
chr1 (44-202)||(34603737-34603894)
chr1 (1-121)||(42297888-42298011)
chr1 (16-113)||(19754641-19754737)
chr1 (5-97)||(12318463-12318556)
chr1 (49-117)||(19752862-19752930)
chr1 (16-106)||(193757-193849)
chr1 (2-89)||(2926642-2926730)
chr1 (2-143)||(6808586-6808726)
chr1 (168-251)||(19752952-19753032)
chr1 (178-234)||(19754772-19754826)
chr1 (10-92)||(25652225-25652308)
chr1 (167-200)||(6398927-6398960)
chr1 (6-46)||(2262965-2263005)
[»] chr6 (15 HSPs)
chr6 (17-251)||(17758171-17758402)
chr6 (17-253)||(17763138-17763371)
chr6 (1-201)||(26800719-26800917)
chr6 (5-251)||(5043763-5044006)
chr6 (2-239)||(22424626-22424861)
chr6 (24-251)||(26829909-26830137)
chr6 (1-251)||(21589063-21589308)
chr6 (1-227)||(3808518-3808744)
chr6 (3-198)||(2972777-2972973)
chr6 (1-66)||(21593796-21593860)
chr6 (16-117)||(603005-603110)
chr6 (3-140)||(9572725-9572862)
chr6 (176-251)||(602903-602975)
chr6 (11-48)||(12221094-12221131)
chr6 (48-92)||(25073754-25073798)
[»] chr8 (13 HSPs)
chr8 (16-251)||(11384131-11384366)
chr8 (17-198)||(40328923-40329102)
chr8 (3-160)||(4283658-4283813)
chr8 (16-203)||(18655546-18655734)
chr8 (1-251)||(42434779-42435027)
chr8 (2-201)||(3772325-3772521)
chr8 (16-117)||(40221891-40221992)
chr8 (16-117)||(10930118-10930221)
chr8 (20-117)||(2999723-2999820)
chr8 (9-157)||(10240263-10240411)
chr8 (5-100)||(9633551-9633640)
chr8 (208-255)||(4743023-4743069)
chr8 (197-251)||(4283819-4283872)
[»] chr7 (20 HSPs)
chr7 (16-249)||(4508499-4508728)
chr7 (1-251)||(34310496-34310752)
chr7 (3-251)||(4510339-4510582)
chr7 (3-251)||(4512181-4512424)
chr7 (1-201)||(8359157-8359352)
chr7 (1-199)||(3259127-3259322)
chr7 (1-251)||(32357848-32358090)
chr7 (1-201)||(2390414-2390615)
chr7 (3-146)||(22328282-22328424)
chr7 (1-201)||(29608869-29609060)
chr7 (54-238)||(2360784-2360960)
chr7 (16-117)||(48599255-48599356)
chr7 (16-233)||(6359762-6359974)
chr7 (168-251)||(30814690-30814770)
chr7 (168-239)||(22270241-22270310)
chr7 (169-206)||(22552448-22552485)
chr7 (184-251)||(6430432-6430496)
chr7 (1-48)||(22270105-22270151)
chr7 (56-159)||(1360051-1360154)
chr7 (2-30)||(3904624-3904652)
[»] scaffold0176 (1 HSPs)
scaffold0176 (17-251)||(17793-18024)
[»] chr2 (12 HSPs)
chr2 (1-250)||(45727061-45727305)
chr2 (1-253)||(35446675-35446920)
chr2 (16-197)||(42287953-42288133)
chr2 (2-196)||(17450710-17450898)
chr2 (1-252)||(1631520-1631768)
chr2 (1-118)||(33648304-33648421)
chr2 (23-201)||(7451270-7451448)
chr2 (5-141)||(24398194-24398332)
chr2 (1-159)||(30217923-30218080)
chr2 (56-139)||(42261384-42261464)
chr2 (193-255)||(29868182-29868241)
chr2 (1-45)||(12123578-12123622)
[»] scaffold0466 (1 HSPs)
scaffold0466 (16-251)||(7473-7703)
[»] chr5 (21 HSPs)
chr5 (2-164)||(27637487-27637648)
chr5 (3-251)||(5058179-5058423)
chr5 (1-117)||(40147393-40147508)
chr5 (16-251)||(27015669-27015896)
chr5 (88-251)||(40751195-40751351)
chr5 (17-203)||(213613-213800)
chr5 (3-120)||(316897-317014)
chr5 (1-159)||(16640818-16640976)
chr5 (88-251)||(40763200-40763356)
chr5 (1-120)||(4160731-4160850)
chr5 (176-238)||(28278592-28278652)
chr5 (3-99)||(30793269-30793362)
chr5 (176-251)||(38747281-38747353)
chr5 (3-84)||(35616302-35616381)
chr5 (169-254)||(40147531-40147613)
chr5 (1-48)||(16452212-16452258)
chr5 (1-48)||(28278448-28278494)
chr5 (5-106)||(10700580-10700682)
chr5 (196-253)||(13488517-13488571)
chr5 (1-37)||(13343192-13343228)
chr5 (16-48)||(42927037-42927069)
[»] scaffold0236 (1 HSPs)
scaffold0236 (1-202)||(10621-10820)
[»] scaffold0197 (1 HSPs)
scaffold0197 (3-143)||(1291-1431)
[»] scaffold0927 (1 HSPs)
scaffold0927 (148-200)||(3431-3482)
[»] scaffold0002 (1 HSPs)
scaffold0002 (56-139)||(490219-490299)


Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 5 - 332
Target Start/End: Complemental strand, 55302004 - 55301677
Alignment:
Q  5 agtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctt 104  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55302004 agtaggtcattgttggaccgaacttggtgaacatttcttagtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctt 55301905  T
Q  105 tgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacc 204  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  55301904 tgctatgcacttggttttctagattagatctagattgtttttattgcttgtggtttattcacatttggttattggttgtcattgatacttgctccacacc 55301805  T
Q  205 tcatataatttgtattggtgtgaaatttgagtccggaattcacaacacaaattgattaaaaaagagaaaatgcaatggcagtgaaagtatgcattacctt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55301804 tcatataatttgtattggtgtgaaatttgagtccggaattcacaacacaaattgattaaaaaagagaaaatgcaatggcagtgaaagtatgcattacctt 55301705  T
Q  305 caagctgaagtctttatattcttctgtg 332  Q
    |||| |||||||||||||||||||||||    
T  55301704 caagttgaagtctttatattcttctgtg 55301677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 49199505 - 49199254
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatt-tcttggtgttgttatct---tttctttactctctttatcttgtttatcctttggttgaat 96  Q
    ||||| |||||||| |||||||||||||||||||||| | ||||||||||||| |||   ||||| ||||||||||||||||||||||||||||||  ||    
T  49199505 ccagactaggtcatggttggaccgaactgggtgaacaatctcttggtgttgttgtctatttttctctactctctttatcttgtttatcctttggttagat 49199406  T
Q  97 tgtggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgc 196  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||    
T  49199405 tgtggttttgctatgcacttg-ttttctagattagatctagattgttgttattgcttgtggtt-atttacatttggttattggttgccattgatacttgc 49199308  T
Q  197 tccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||| ||||||||||||||||| ||||||||||||| || ||||||||||||    
T  49199307 tccacacatcatataatttgtattgctgtgaaatttgagacc-gaattcacaaca 49199254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 43403780 - 43403530
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatt-tcttggtgttgttatct---tttctttactctctttatcttgtttatcctttggttgaat 96  Q
    |||||||||||||| |||||||||||||||||||||| | ||||| ||||||| | |   |||||  |||||||||||||||||||||||||||||  ||    
T  43403780 ccagagtaggtcatggttggaccgaactgggtgaacaatctcttgatgttgttgtttatttttctccactctctttatcttgtttatcctttggttagat 43403681  T
Q  97 tgtggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgc 196  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||||||||    
T  43403680 tgtggttttgctatgcactt-gttttctagattagatctagattgttattattgcttgtgg-ttatttacatttggttattggttgccattgatacttgc 43403583  T
Q  197 tccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||| ||  ||| |||||||||||||||||||| ||||||||||||||||||    
T  43403582 tccacacatc--atagtttgtattggtgtgaaattttagtccggaattcacaaca 43403530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 6095635 - 6095389
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||    
T  6095635 ccagagtaggtcaa-gttggaccgaactgtgtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatgccttggttggattgtg 6095537  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcca 200  Q
    | |||||||| ||||| | ||| |||| ||  |||| |||||| ||||||||||||| ||| ||||||||| |||||||||| |||||||||||||||||    
T  6095536 gttttgctatacacttcg-tttatagactaggtctatattgttgttattgcttgtgg-ttatttacatttgattattggttgccattgatacttgctcca 6095439  T
Q  201 cacctcatataatttgtattggtgtgaaatttgagtccggaattcacaacac 252  Q
    ||| ||  ||| |||||||||||||||||||||||||| |||||||||||||    
T  6095438 cacatc--atagtttgtattggtgtgaaatttgagtcccgaattcacaacac 6095389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 43401837 - 43401586
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatt-tcttggtgttgttatct---tttctttactctctttatcttgtttatcctttggttgaat 96  Q
    |||||||||||||| |||||||||||||||||||||| | ||||||||||||| |||   ||||| ||||||||||||||||||||||||||||||  ||    
T  43401837 ccagagtaggtcatggttggaccgaactgggtgaacaatctcttggtgttgttgtctatttttctctactctctttatcttgtttatcctttggttagat 43401738  T
Q  97 tgtggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgc 196  Q
    ||||  |||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||||||||    
T  43401737 tgtgattttgctatgcactt-gttttctagattagatctagattgttgttattgcttgtgg-ttatttacatttggttattggttgccattgatacttgc 43401640  T
Q  197 tccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaacac 252  Q
    ||||||  ||  ||| || |||||||||||||||||||||||  ||||||||||||    
T  43401639 tccacagatc--atagttggtattggtgtgaaatttgagtcccaaattcacaacac 43401586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 54593850 - 54594086
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgttgttatcttttcttta--ctctctttatcttgtttatcctttggtt-gaattgtggctttgctatgc 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| | ||| || | ||||||| ||||||||||    
T  54593850 gttggaccaaactgggtgaacatttcttggtgttgttatcttttctttagtctctctttatcttgtttattccttgctttggattgtggttttgctatgc 54593949  T
Q  113 acttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacctcatataa 212  Q
    || ||||||  |||| ||| |||| ||| || ||||||||||||||| | ||| |||||||||||||||||||||||||||||||| |||  |||||||     
T  54593950 acatggttta-tagactatgtctatattcttgttattgcttgtggtt-atttatatttggttattggttgtcattgatacttgctctacatatcatatag 54594047  T
Q  213 tttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  54594048 tttgtattggtgtgaaatttgagtcccgaattcacaaca 54594086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 46860606 - 46860804
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  46860606 ccagagtaggtcattgttggaccgaattggatgaacattttttggtgttgttatcttttctttactctctttatcttgtttatcctttggttagattgtg 46860705  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcca 200  Q
    | |||||||||||||||| ||| |||||||  |||| |||||| || ||| |||||| ||| |||||||||||||||||||| |||||||| ||||||||    
T  46860706 gttttgctatgcacttgg-tttatagattaggtctatattgttgttgttgtttgtgg-ttatttacatttggttattggttgccattgatatttgctcca 46860803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 36018993 - 36019178
Alignment:
Q  14 ttgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgca 113  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||  ||||||| |||| ||  ||    
T  36018993 ttgttggaccgaactggatgaacattttttggtgttgttatcttttttctactctctttatcttgtttatcctttggttagattgtggttttgttaaaca 36019092  T
Q  114 cttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccac 201  Q
    ||| ||||||||||||| |||||||||||| || |||||||||| | | ||||||||| ||||||||||| |||||||||||||||||    
T  36019093 ctt-gttttctagattagatctagattgttattgttgcttgtgg-taatttacatttgattattggttgtgattgatacttgctccac 36019178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 41819559 - 41819363
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatctttt-ctttactctctttatcttgtttatcctttggttgaattgt 99  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| || |||| |||||||||||||||||||||||||  |||||    
T  41819559 ccagagtaggtcattgttggaccaaactgggtgaacatttattggtgttgttatttttttctctactttctttatcttgtttatcctttggttagattgt 41819460  T
Q  100 ggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcc 199  Q
    || |||||||||||||||||||  | || ||  |||| |||||| || ||||||||| |||||||    |||||| ||||||| ||||||||||||||||    
T  41819459 ggttttgctatgcacttggttta-tggactaggtctatattgttgttgttgcttgtgatttactt----ttggttgttggttgccattgatacttgctcc 41819365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 30236271 - 30236458
Alignment:
Q  16 gttggaccgaactgggtgaaca-tttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcac 114  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||  |||| |||||||    
T  30236271 gttggaccgaactaggtcaacaatttcttggtgttgttatcttttctttactctctttatcttgtttataccttggttggattgtgtttttgttatgcac 30236370  T
Q  115 ttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacac 203  Q
    |||| ||| |||| ||  |||| |||||| || |||||||||||| |   |  ||||||| ||||||| ||||||||||||||||||||    
T  30236371 ttgg-tttatagactaggtctatattgttgttgttgcttgtggttaatcaatttttggttgttggttgacattgatacttgctccacac 30236458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 31340240 - 31340042
Alignment:
Q  21 accgaactgggtgaacattt-cttggtgttgttatcttttcttta-ctctctttatcttgtttatcctttggttgaattgtggctttgctatgcacttgg 118  Q
    |||||||||||| ||||||| |||||||||||||||||||||||  || |||||||||||||||| | || |||| ||||||| ||||||||||||||||    
T  31340240 accgaactgggtcaacattttcttggtgttgttatcttttcttttgctttctttatcttgtttattccttagttggattgtggttttgctatgcacttgg 31340141  T
Q  119 ttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacctcatataatttgta 218  Q
     ||| |||| ||  |||| ||| || || |||||||||||||||     ||||||| ||||||| ||||||||| |||||||||| |  |||| ||||||    
T  31340140 -tttatagactaggtctatattattgttgttgcttgtggtttac-----tttggttgttggttgccattgatacatgctccacacat--tatagtttgta 31340049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 47304401 - 47304591
Alignment:
Q  20 gaccgaactgggtgaaca-tttcttggtgttgttatcttttctttactct------ctttatcttgtttatcctttggttgaattgtggctttgctatgc 112  Q
    ||||||||||||| |||| ||| |||||||||||||||||||||| || |      ||||||||||||||| | || |||| ||||||| ||||||||||    
T  47304401 gaccgaactgggtcaacaatttattggtgttgttatcttttcttttcttttgctttctttatcttgtttattccttagttggattgtggttttgctatgc 47304500  T
Q  113 acttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacctcata 209  Q
    |||||||||  |||| ||  |||| ||| || || ||||||||| |||||||     ||||| |||||||||||||||||||||||||||| |||||    
T  47304501 acttggttta-tagactaggtctatattattgttgttgcttgtgatttactt-----tggttgttggttgtcattgatacttgctccacacatcata 47304591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 4570084 - 4570202
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttc-tttactctctttatcttgttta-tcctttggttgaattg 98  Q
    ||||||||||| |   |||||||||||||||| ||||||||||||||||||||| ||||| ||| ||| |||||||||||||| |||||   ||| ||||    
T  4570084 ccagagtaggtgaagtttggaccgaactgggtcaacatttcttggtgttgttatattttcttttgctccctttatcttgtttattccttgctttggattg 4570183  T
Q  99 tggctttgctatgcacttg 117  Q
    ||| |||||||||||||||    
T  4570184 tggttttgctatgcacttg 4570202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 46173503 - 46173688
Alignment:
Q  16 gttggaccgaactgggtgaaca-tttcttggtgttgttatcttttcttta-ctctctttatcttgtttatcctttggttgaattgtggctttgctatgca 113  Q
    ||||||||||||| | | |||| ||||||||||||||||||||||||||  || ||||||||||||||||   || |||| ||||||| |||||||||||    
T  46173503 gttggaccgaactagatcaacaatttcttggtgttgttatcttttcttttgctttctttatcttgtttatttcttagttggattgtggttttgctatgca 46173602  T
Q  114 cttggttttctagatta--tatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacac 203  Q
    ||||| ||| |||| ||  | | || ||| ||  | |||||||||||||||     ||||||| ||||||| ||||||||||||||||||||    
T  46173603 cttgg-tttatagaataggtttatatattattgctgttgcttgtggtttac-----tttggttgttggttgccattgatacttgctccacac 46173688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 40913439 - 40913544
Alignment:
Q  16 gttggaccgaactgggtgaacatt-tcttggtgttgttatct---tttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatg 111  Q
    ||||||||||||||||| |||| | |||||||||| || |||   ||||| || |||||||||||||||||||||||||||  ||||||| |||||||||    
T  40913439 gttggaccgaactgggtcaacaatctcttggtgttattgtctatttttctctaatctctttatcttgtttatcctttggttagattgtggttttgctatg 40913538  T
Q  112 cacttg 117  Q
    ||||||    
T  40913539 cacttg 40913544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 26323105 - 26323027
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttc-ttggtgttgttatcttttctttactctctttatcttgtt 80  Q
    |||||||||||||||||||||||| ||||| |||| ||| |||||||| || |||||||| ||||||||||||||||||    
T  26323105 agagtaggtcattgttggaccgaagtgggtaaacaattctttggtgttattctcttttctctactctctttatcttgtt 26323027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 4570210 - 4570272
Alignment:
Q  191 acttgctccacacctcatat--aatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||| | ||||||||||||    
T  4570210 acttgctccacacatcatatataatttgtattggtgtgaaatttgagttcagaattcacaaca 4570272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 191
Target Start/End: Original strand, 5270557 - 5270689
Alignment:
Q  54 tcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcacttggttttctagattatatctagat-tgtttttattgct 152  Q
    |||||||| ||||||||||||| ||||||| ||||||||  ||||||| |||||  | ||||||| || |||||||| |||||||| | || || |||||    
T  5270557 tcttttctctactctctttatcatgtttattctttggttcgattgtggttttgcattacacttgg-ttgctagattagatctagatctattgttgttgct 5270655  T
Q  153 tgtggtttacttacatttggttattggttgtcattgata 191  Q
    ||||||||  ||   ||| ||||||||||||||||||||    
T  5270656 tgtggttt--tt---ttttgttattggttgtcattgata 5270689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 34491480 - 34491557
Alignment:
Q  168 tttggttattggttgtcattgatacttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcaca 248  Q
    ||||||| ||||||| |||| ||||||||||||||| |  |||| ||||||||||||| |||||||||||| |||||||||    
T  34491480 tttggttgttggttgccattaatacttgctccacacat--tatagtttgtattggtgtaaaatttgagtcc-gaattcaca 34491557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 40913566 - 40913647
Alignment:
Q  168 tttggttattggttgtcattgatacttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaacac 252  Q
    ||||||| ||||| | |||||||||||||||| ||| |  |||  |||||||||||||||||||||||||| |||||||||||||    
T  40913566 tttggttgttggtcgccattgatacttgctccgcacat--tattgtttgtattggtgtgaaatttgagtcc-gaattcacaacac 40913647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 49229660 - 49229607
Alignment:
Q  15 tgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactct 68  Q
    ||||||| |||||||||| || ||||||| ||||||||||||||||||||||||    
T  49229660 tgttggatcgaactgggtaaatatttcttagtgttgttatcttttctttactct 49229607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 5433819 - 5433786
Alignment:
Q  168 tttggttattggttgtcattgatacttgctccac 201  Q
    ||||||||||||||||||||||||||||||||||    
T  5433819 tttggttattggttgtcattgatacttgctccac 5433786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 9581619 - 9581658
Alignment:
Q  217 tattggtgtgaaatttgagtccggaattcacaacacaaatt 257  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  9581619 tattggtgtgat-tttgagtccggaattcacaacacaaatt 9581658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 20937792 - 20937880
Alignment:
Q  5 agtaggtcattgttggaccgaactgggtgaacatttcttg-gtgttgttatcttttctttactctctttatcttgtttatcctttggtt 92  Q
    |||| ||||| ||||||| ||||| ||| |||| || ||  |||| ||| |||||||| |||||||||||||||||||||  |||||||    
T  20937792 agtatgtcatagttggacagaactaggtaaacaattattttgtgtggttctcttttctctactctctttatcttgtttattatttggtt 20937880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 40632591 - 40632826
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcact 115  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  40632591 gttggaccgaactgggtaaacatttcttggtgttgttatcttttttttactctctttatcttgtttatcctttggttgaattgtggttttgccatgcact 40632690  T
Q  116 tggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacctcatataattt 215  Q
    ||| | | |||| ||  |||| |||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||| |||    
T  40632691 tgg-tatatagactaggtctatattgttgttattgcttgtggtttatttacatttggttattggttgccattgatacttgctctacacatcatatagttt 40632789  T
Q  216 gtattggtgtgaaatttgagtccggaattcacaacac 252  Q
    ||||||||||| |||||||||||||||||||||||||    
T  40632790 gtattggtgtgtaatttgagtccggaattcacaacac 40632826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 2209846 - 2210096
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatt-tcttggtgttgttatct---tttctttactctctttatcttgtttatcctttggttgaat 96  Q
    |||||||||||||| |||||||||||||||||||||| | ||||||||||||| |||   ||||| |||||||||||||||||||||| |||||||  ||    
T  2209846 ccagagtaggtcatggttggaccgaactgggtgaacaatctcttggtgttgttgtctatttttctctactctctttatcttgtttatcatttggttagat 2209945  T
Q  97 tgtggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgc 196  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||||| |||||| |||||| ||| |||||||||||||||||||| |||||||||||||    
T  2209946 tgtggttttgctatgcactt-gttttctagattagatctagattgttgttattgtttgtgg-ttatttacatttggttattggttgccattgatacttgc 2210043  T
Q  197 tccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||| ||  ||| |||||||||||||||||||||||||||||||| ||||||    
T  2210044 tccacacatc--atagtttgtattggtgtgaaatttgagtccggaattaacaaca 2210096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 50673883 - 50673636
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgttta-tcctttggttgaattgt 99  Q
    |||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||| |||||    
T  50673883 ccagagtaggtcaa-gttggaccgaactaggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttattccttgctttggattgt 50673785  T
Q  100 ggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcc 199  Q
    || |||||||||||||||   || |||| || ||||| |||||| ||||||||| ||| | | |||||||||||||||||||| ||||||||||||||||    
T  50673784 ggttttgctatgcacttg--attatagactagatctatattgttgttattgcttatgg-tgatttacatttggttattggttgacattgatacttgctcc 50673688  T
Q  200 acacctcatataatttgtattggtgtgaaatttgagtccggaattcacaacaca 253  Q
    |||| ||  ||||||||||||  |||| ||||||||||||||||||||||||||    
T  50673687 acacatc--ataatttgtattaatgtgtaatttgagtccggaattcacaacaca 50673636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 41964548 - 41964743
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||    
T  41964548 ccagagtaggtcaa-gttggaccgaactgggtgagcatttcttggtgttgttatcttttctttactctc--tatcttgtttatcctttggttagattgtg 41964644  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcca 200  Q
    | |||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||| ||||||||| || ||||||| |||||||||||||||||    
T  41964645 gttttgctatgcactt-gttttctagattagatctagattgttgttattgcttgtgg-ttatttacatttgattgttggttgccattgatacttgctcca 41964742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 12073524 - 12073721
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||    
T  12073524 ccagagtaggtcattgttggaccgaactaggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttattctttggttagattgtg 12073623  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcca 200  Q
    | |||| ||||||||||| ||||||||||| |||||||||||| || |||||||||||||| || |  |||||| ||  ||| |||||||||||||||||    
T  12073624 gttttgttatgcacttgg-tttctagattagatctagattgttgttgttgcttgtggttta-ttcc--ttggttgtttattgccattgatacttgctcca 12073719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 379512 - 379710
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  379512 ccagagtaggtcattgttggaccgaactggatgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttagattgtg 379611  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcca 200  Q
    | |||| ||||||||||| ||| |||| ||  |||| |||||| || ||| |||||| ||| ||||||||| |||||||||| || ||||||||||||||    
T  379612 gttttgttatgcacttgg-tttatagactaggtctatattgttgttgttgtttgtgg-ttatttacatttgattattggttgccactgatacttgctcca 379709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 41639558 - 41639803
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41639558 ccagagtaggtcaa-gttggaccgaactgagtgaacatttcttggtgttgttatcgtttctttactctctttatcttgtttatcctttggttgaattgtg 41639656  T
Q  101 gctttgctatgcacttggttttctagattatatctagat---tgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgct 197  Q
    | |||||||||||||||   || |||| ||  |||| ||     || || |||||||||||    |||||||||||||||||||| ||||||||||||||    
T  41639657 gttttgctatgcacttg--attatagactaggtctatatatcatttgttgttgcttgtggt----ttacatttggttattggttgccattgatacttgct 41639750  T
Q  198 ccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaacaca 253  Q
    |||||| ||  ||| ||||||||| |||||||||||||| | ||||||||||||||    
T  41639751 ccacacatc--atagtttgtattgatgtgaaatttgagt-ctgaattcacaacaca 41639803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 26699478 - 26699337
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||  |||||||||||||||||||||||||||||||||| |||||||| |||| ||    
T  26699478 ccagagtaggtcattgttggaccgaactgggtaaaaatttcttagtgccgttatcttttctttactctctttatcttgtttattctttggttcaattatg 26699379  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtt 143  Q
    | ||||||||||||||||  |||||||||| ||||||||||||    
T  26699378 gttttgctatgcacttgg-attctagattagatctagattgtt 26699337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 6656088 - 6656203
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  6656088 ccagagtaggtcaa-gttggaccgaattgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatccttttgttggattgtg 6656186  T
Q  101 gctttgctatgcacttg 117  Q
    | |||||||||||||||    
T  6656187 gttttgctatgcacttg 6656203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 33989977 - 33990131
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    ||||||||||||||| |||||  ||||||||| |||||||||||||||| |||| |||| | ||||||||||||||||||||| |||||||| |||| ||    
T  33989977 ccagagtaggtcattcttggattgaactgggtaaacatttcttggtgttattatattttttctactctctttatcttgtttattctttggttcaattctg 33990076  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtg 156  Q
    | |||||||||||||||| ||||||||||| |||||||||||| || |||||||||    
T  33990077 gatttgctatgcacttgg-tttctagattagatctagattgttgttgttgcttgtg 33990131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 35662575 - 35662767
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggc 102  Q
    |||||||||||  ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||     
T  35662575 agagtaggtcaa-gttggaccgaactgaatgaacattttttggtgttgttatcttttctttactctctttatcttgtttattccttggttggattgtggt 35662673  T
Q  103 tttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccaca 202  Q
    |||||||||||||||| ||| |||| ||| |||| |||||| || |||||| |||     |||  ||||||| ||||||| |||||||||||||||||||    
T  35662674 tttgctatgcacttgg-tttatagactatgtctatattgttgttgttgcttatgg-----ttaattttggttgttggttgccattgatacttgctccaca 35662767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 46703633 - 46703740
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||    
T  46703633 ccagagtaggtcattgttggaccgaattgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcatttggttagattgtg 46703732  T
Q  101 gctttgct 108  Q
    | ||||||    
T  46703733 gttttgct 46703740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 55085439 - 55085286
Alignment:
Q  40 tcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcacttggttttctagattatatctagat 139  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |||||||||||||||| |||||| |||| ||||||||    
T  55085439 tcttggtgttgttatcttttctttactctctttatcttgtttattccttggttggattgtggttttgctatgcacttgg-tttctaaattagatctagat 55085341  T
Q  140 tgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcca 200  Q
    |||| ||||||||||| |||       ||||| || |||||||||||||||||||||||||    
T  55085340 tgttgttattgcttgtagtt------aatttgattgttggttgtcattgatacttgctcca 55085286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 8648271 - 8648382
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||    
T  8648271 ccagagtaggtcaa-gttggaccaaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttattccttggttggattgtg 8648369  T
Q  101 gctttgctatgca 113  Q
    | |||||||||||    
T  8648370 gttttgctatgca 8648382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 8665540 - 8665651
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  |||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||    
T  8665540 ccagagtaggtcaa-gttggaccaaactaggtgtacatttcttggtgttgttatcttttctttactctctttatcttgtttattccttggttggattgtg 8665638  T
Q  101 gctttgctatgca 113  Q
    | |||||||||||    
T  8665639 gttttgctatgca 8665651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 50262737 - 50262487
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaac-atttcttggtgttgttatc---ttttctttactctctttatcttgtttatcctttggttgaat 96  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||   |||||| |||||| |||||||||||||| | ||  ||| ||    
T  50262737 ccagagtaggtcattgttggaccgaactgggtgaacaatctcttggtgttgttgtctatttttctctactctttttatcttgtttattccttacttggat 50262638  T
Q  97 tgtggctttgctatgcacttggtt---ttctagat-tatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatac 192  Q
    ||||| ||||| ||||||||| ||   | |||| | |||||    |||||| || |||||||||| ||| ||   |||| || |||||||||||||||||    
T  50262637 tgtggttttgccatgcacttgattacatactaggtctatat----attgttgttgttgcttgtgg-ttaattttttttgcttgttggttgtcattgatac 50262543  T
Q  193 ttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||||||| ||  ||| |||||||||||||||||||||||| | ||||||||||||    
T  50262542 ttgctccacacatc--atagtttgtattggtgtgaaatttgagt-ctgaattcacaaca 50262487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 54883166 - 54883273
Alignment:
Q  16 gttggaccgaactgggtgaaca-tttcttggtgttgttatctttt-ctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgca 113  Q
    ||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||    
T  54883166 gttggaccgaactgggtcaacaatttcttggtgttgttatctttttctttactctctttatcttatttattctttggttgaattgtggttttgctctgca 54883265  T
Q  114 cttggttt 121  Q
     |||||||    
T  54883266 tttggttt 54883273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 12119673 - 12119815
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaaca-tttcttggtgttgttatct----tttctttactctctttatcttgtttatcctttggttgaatt 97  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||    ||||| ||||||||||||||||||||  |||||||   |||    
T  12119673 agagtaggtcattgttggaccgaactaggtgaacaatttcttggtgttgtcatctattttttctctactctctttatcttgtttagtctttggtccgatt 12119772  T
Q  98 gtggctttgctatgcacttggttttctagattatatctagattg 141  Q
    |||| |||||||||||||| | ||||||||||| ||||||||||    
T  12119773 gtggttttgctatgcacttag-tttctagattagatctagattg 12119815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 27416987 - 27416886
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcact 115  Q
    |||||||||||||| || |||| |  |||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||    
T  27416987 gttggaccgaactgagtcaacaatctttggtgttgttatcttgtctttactctctttatcttgtttattctttggttggattgtggttttgccatgcact 27416888  T
Q  116 tg 117  Q
    ||    
T  27416887 tg 27416886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 26364390 - 26364483
Alignment:
Q  24 gaactgggtgaaca-tttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcactt 116  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||| |||||||| |||||    
T  26364390 gaactgggtcaacaatttcttggtgttgttatcttttctttactctctttatcttgtttattccttgcttggattgtggttttgctatacactt 26364483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 38811225 - 38811144
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttctt-ggtgttgttatcttttctttactctctttatcttgtttat 83  Q
    |||||||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||| |||||||||||| ||||||||    
T  38811225 agagtaggtcattgttggaccgaactgggtaaacaattcttcggtgttgttctcttttctctactctctttatattgtttat 38811144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 46703739 - 46703879
Alignment:
Q  60 ctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcacttggttttctagatta--tatctagattgtttttattgcttgtgg 157  Q
    |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||   || |||| ||  | | || |||||| || ||||||| ||    
T  46703739 ctttactctctttatcttgtttatcctttggttagattgtggttttgctatgcacttg--attatagaataggtctatatattgttgttgttgcttgagg 46703836  T
Q  158 tttacttacatttggttattggttgtcattgatacttgctccac 201  Q
     ||| ||||||||||||||||||||| |||||||||| ||||||    
T  46703837 -ttatttacatttggttattggttgttattgatacttactccac 46703879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 22882785 - 22882652
Alignment:
Q  4 gagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttg--gttgaattgtgg 101  Q
    ||||||||||||||||||||||||||| | ||||||||||||   |||||| |||||| ||||||||||||||| ||||| |||||   ||  |||||||    
T  22882785 gagtaggtcattgttggaccgaactggataaacatttcttgg---tgttattttttctatactctctttatcttatttattctttgatattccattgtgg 22882689  T
Q  102 ctttgctatgcacttggttttctagattatatctagat 139  Q
     ||| || |  |||||||||| ||||||||||||||||    
T  22882688 ttttactttaaacttggtttt-tagattatatctagat 22882652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 22934449 - 22934316
Alignment:
Q  4 gagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttg--gttgaattgtgg 101  Q
    ||||||||||||||||||||||||||| | ||||||||||||   |||||| |||||| ||||||||||||||| ||||| |||||   ||  |||||||    
T  22934449 gagtaggtcattgttggaccgaactggataaacatttcttgg---tgttattttttctatactctctttatcttatttattctttgatattccattgtgg 22934353  T
Q  102 ctttgctatgcacttggttttctagattatatctagat 139  Q
     ||| || |  |||||||||| ||||||||||||||||    
T  22934352 ttttactttaaacttggtttt-tagattatatctagat 22934316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 6656222 - 6656305
Alignment:
Q  168 tttggttattggttgtcattgatacttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||| |||| ||||||||||||||||||||||| |||||   | | ||||| |||||||||||||||||||||||||||||    
T  6656222 tttggttgttggatgtcattgatacttgctccacacatcatagtttgtttattgatgtgaaatttgagtccggaattcacaaca 6656305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 3786097 - 3786185
Alignment:
Q  5 agtaggtcattgttggaccgaactgggtgaacatttctt-ggtgttgttatcttttctttactctctttatcttgtttatcctttggtt 92  Q
    ||||||||||||||| ||| ||||| || |||| || || ||||||||| |||||||| |||||||||||||||||| || ||||||||    
T  3786097 agtaggtcattgttgtaccaaactgagttaacaattatttggtgttgttctcttttctctactctctttatcttgttcattctttggtt 3786185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 21688538 - 21688621
Alignment:
Q  167 atttggttattggttgtcattgatacttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaacac 252  Q
    |||| ||| ||| |||||||||||||||||||||||| ||  ||| |||||||| |||| |||||||||| || ||||||||||||    
T  21688538 atttagttgttgattgtcattgatacttgctccacacatc--atagtttgtattagtgtaaaatttgagttcgaaattcacaacac 21688621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 33090013 - 33090129
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttcttggt-gttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtgg 101  Q
    ||||||||| |||||||||||| ||| | | |||| ||||| |  |||||| |||||||| | |||||||||||||||||||  |||||||  |||||||    
T  33090013 agagtaggttattgttggaccggactagataaacaattctttgaagttgttctcttttctctgctctctttatcttgtttattttttggttcgattgtgg 33090112  T
Q  102 ctttgctatgcacttgg 118  Q
     |||||| | |||||||    
T  33090113 ttttgctttacacttgg 33090129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 34112952 - 34113034
Alignment:
Q  5 agtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttg 89  Q
    |||||||||||||||||||||| | ||| |||| || ||  || |||| |||||||| ||||| ||||||||||||||| |||||    
T  34112952 agtaggtcattgttggaccgaatttggtaaacaattatt--tggtgttctcttttctctactcactttatcttgtttattctttg 34113034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 54881566 - 54881629
Alignment:
Q  133 tctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccac 201  Q
    |||| |||||| ||||||||||||||||| ||     ||||| ||||||||||||||||||||||||||    
T  54881566 tctatattgttgttattgcttgtggtttattt-----tggttgttggttgtcattgatacttgctccac 54881629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5350040 - 5350087
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgt 48  Q
    |||||||||||||||||||||| ||| ||||| ||||||| |||||||    
T  5350040 ccagagtaggtcattgttggactgaattgggtaaacatttattggtgt 5350087  T

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Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 21703868 - 21703829
Alignment:
Q  5 agtaggtcattgttggaccgaactgggtgaacatttcttg 44  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  21703868 agtaggtcattgtttgaccgaactgggtaaacatttcttg 21703829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24969797 - 24969843
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgt 48  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||    
T  24969797 ccagagtaggtcaa-gttggaccgaactgggtaaacatttcttggtgt 24969843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 32091618 - 32091719
Alignment:
Q  47 gttgttatctttt-ctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcacttggttttctagattatatctagattgtttt 145  Q
    ||||||||||||| || ||| ||||||||||||||||| |||| ||| |||||||| ||| || | ||||| |||| |||||||| ||||| |||||| |    
T  32091618 gttgttatctttttctctacgctctttatcttgtttattctttagttcaattgtgg-ttttctttacactt-gtttgctagattagatctaaattgttgt 32091715  T
Q  146 tatt 149  Q
    ||||    
T  32091716 tatt 32091719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 202
Target Start/End: Original strand, 41961691 - 41961725
Alignment:
Q  168 tttggttattggttgtcattgatacttgctccaca 202  Q
    ||||||||||||||||||||||||||||| |||||    
T  41961691 tttggttattggttgtcattgatacttgccccaca 41961725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 44570397 - 44570307
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaaca-tttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggtt 92  Q
    |||||||| |||| ||||| | |||||||| |||| ||| ||| ||||||| ||  ||||||||||| |||||||| ||||| ||||||||    
T  44570397 agagtagggcattattggatcaaactgggtaaacaattttttgttgttgttctcccttctttactctttttatcttatttattctttggtt 44570307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 35369479 - 35369405
Alignment:
Q  5 agtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttat 83  Q
    ||||||||||||||||||| |||  ||| |||||||||||  ||||    ||||  |||||||||||||||||||||||    
T  35369479 agtaggtcattgttggaccaaacaaggtaaacatttcttgacgttg----ctttcttttactctctttatcttgtttat 35369405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 6199899 - 6199804
Alignment:
Q  9 ggtcattgttggaccgaactgggtgaacat-ttcttggtg--ttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtgg 101  Q
    ||||||||||||  | |||| ||||||||  |||||||||  ||||| ||| | |||||||||||||||||||||| | ||||||||  |||||||    
T  6199899 ggtcattgttgggtcaaactaggtgaacaaattcttggtgagttgttctctatcctttactctctttatcttgtttgttctttggttcgattgtgg 6199804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 6542201 - 6542169
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgt 48  Q
    ||||||||||||||||| |||||||||||||||    
T  6542201 gttggaccgaactgggtaaacatttcttggtgt 6542169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 48143362 - 48143418
Alignment:
Q  193 ttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaacac 252  Q
    ||||||||||| |||||   |||||||||||||||  |||||||||||||||||||||||    
T  48143362 ttgctccacacatcatag--tttgtattggtgtgat-tttgagtccggaattcacaacac 48143418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 13549036 - 13548792
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  13549036 ccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttattctttggttggattgtg 13548938  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcca 200  Q
    | |||||||||||||| | ||| |||| ||  |||| ||| || || |||||||||||||||     ||||||| |||||||||||||||||||||||||    
T  13548937 gttttgctatgcactttggtttatagactaggtctatattattgttgttgcttgtggtttac-----tttggttgttggttgtcattgatacttgctcca 13548843  T
Q  201 cacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||| ||||||| |||||||||||||||||||||||| | ||||||||||||    
T  13548842 cacatcatatagtttgtattggtgtgaaatttgagttcagaattcacaaca 13548792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 37876788 - 37876573
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcact 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||    
T  37876788 gttgaaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcatttggttgaattgtggtttttctatgcact 37876689  T
Q  116 tggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacctcatataattt 215  Q
    ||| ||| |||| ||  |||| | |||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |||    
T  37876688 tgg-tttatagactaggtctatagtgttgtttttgcttgtggtttatttacatttggttattggttgccattgatacttgctccacacatcatatagttt 37876590  T
Q  216 gtattggtgtgaaattt 232  Q
    |||||||||||||||||    
T  37876589 gtattggtgtgaaattt 37876573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 28242436 - 28242635
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||  ||||||    
T  28242436 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctctactctctttatcttgtttatcattttgttagattgtg 28242535  T
Q  101 g-ctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcc 199  Q
    |  |||||||| ||||||| |||||| |||| |||||||||||| || ||||||| || ||| |||||||||||||||||||||||||||||||||||||    
T  28242536 gtttttgctattcacttgg-tttctaaattagatctagattgttgttgttgcttgagg-ttatttacatttggttattggttgtcattgatacttgctcc 28242633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 11348830 - 11349080
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctct--ttatcttgtttatcctttggtt-gaatt 97  Q
    |||||||||||||  |||||||||||||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| | ||| || | |||    
T  11348830 ccagagtaggtcaa-gttggaccgaactgagtgaacatttcttgatgttgttatcttttctttactctctctttatcttgtttattccttgctttggatt 11348928  T
Q  98 gtggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgct 197  Q
    |||| |||||||||||||||||||  |||| ||  |||| |||||| ||||||||||||||| | ||||||||| |||||  ||||||||||||||||||    
T  11348929 gtggttttgctatgcacttggttta-tagactaggtctatattgttgttattgcttgtggtt-atttacatttgattattaattgtcattgatacttgct 11349026  T
Q  198 ccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    |||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  11349027 ccacacatcatatagtttgtattggtgtaaaatttgagtcccgaattcacaaca 11349080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 37033104 - 37032873
Alignment:
Q  5 agtaggtcattgttggaccgaactgggtgaacatt-tcttggtgttgttatct--tttctttactctctttatcttgtttatcctttggttgaattgtgg 101  Q
    |||||||||| |||||||||||||||||||||| | | || |||||||| |||  ||||| ||||||||||||||||||||||||||||||  | ||||     
T  37033104 agtaggtcatggttggaccgaactgggtgaacaatctattcgtgttgttgtctattttctctactctctttatcttgtttatcctttggttagagtgtga 37033005  T
Q  102 ctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccac 201  Q
     ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||| |||||||||    
T  37033004 ttttgctatgcacttg-ttttctagattagatctagattgttgttattgcttgtggtt-atttacatttggttattggttgccattgatatttgctccac 37032907  T
Q  202 acctcatataatttgtattggtgtgaaatttgag 235  Q
    || ||||||| ||||||||| |||||||||||||    
T  37032906 acatcatatagtttgtattgttgtgaaatttgag 37032873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 47115304 - 47115502
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||||||||| |||  ||||||    
T  47115304 ccagagtaggtcattgttggaccgaactgggtgaacatttcttgatgttgttatcttttctctgctctttttatcttgtttatccttttgttagattgtg 47115403  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcca 200  Q
    | |||| ||||||||| ||||||||||||| |||||||||||| ||||||||||| | ||| ||||||||| || ||| |||||||||||||||||||||    
T  47115404 gttttgttatgcactt-gttttctagattagatctagattgttgttattgcttgt-gattatttacatttgattgttgattgtcattgatacttgctcca 47115501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 13547125 - 13546883
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  13547125 ccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttattctttggttggattgtg 13547027  T
Q  101 gctttgctatgcacttggttttctagattata--tctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctc 198  Q
    | ||     ||||||||| ||| || | ||||  |||| ||| || || |||||||||||||||     ||||||| ||||||| |||||||||||||||    
T  13547026 gttt-----tgcacttgg-tttataaactataggtctatattattgttgttgcttgtggtttac-----tttggttgttggttgccattgatacttgctc 13546938  T
Q  199 cacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaacacaa 254  Q
    ||||| | ||||| |||||||||||| |||||||||| || |||||||||||||||    
T  13546937 cacacattatatagtttgtattggtgagaaatttgagacc-gaattcacaacacaa 13546883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 47255376 - 47255148
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttct---ttactctctttatcttgtttatcctttggttgaatt 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |   |||||||||||||||||||||||||||||||  |||    
T  47255376 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttattttttttcttttactctctttatcttgtttatcctttggttagatt 47255277  T
Q  98 gtggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgct 197  Q
    |||| |||||||||||||||||||  |||| ||  |||| ||| || || |||||| ||||||||||     ||||| ||||||| ||||||||| ||||    
T  47255276 gtggttttgctatgcacttggttta-tagactaggtctatattattgttgttgcttatggtttactt-----tggttgttggttgccattgatacctgct 47255183  T
Q  198 ccacacctcatataatttgtattggtgtgaaatttga 234  Q
    |||||| |||||   ||| ||||||||||||||||||    
T  47255182 ccacacatcatag--tttatattggtgtgaaatttga 47255148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 29136379 - 29136585
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgt-tatcttttctttactctctttatcttgtttatcctttggttgaattgt 99  Q
    |||||||||||||   |||||||||||| |||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||||||||||  |||||    
T  29136379 ccagagtaggtcaagtttggaccgaactaggtgaacatttcttggtgctgtctat-ttttctctactctctttatcttgtttatcctttggttagattgt 29136477  T
Q  100 ggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcc 199  Q
    || |||||||||||||||| ||| |||| ||  ||||  ||||| ||||||||||||| ||| ||| |||||||||||||||||||||| ||||||||||    
T  29136478 ggttttgctatgcacttgg-tttatagactaggtctattttgttgttattgcttgtgg-ttagttatatttggttattggttgtcattggtacttgctcc 29136575  T
Q  200 acacctcata 209  Q
    |||| |||||    
T  29136576 acacatcata 29136585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 37168430 - 37168622
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||  ||||||    
T  37168430 ccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttattccttggtttgattgtg 37168528  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctc 198  Q
    | |||||||||||||||   || |||| ||  |||| | | || || ||||||| || ||| ||||||||||||||||||||||||||||||||||||    
T  37168529 gttttgctatgcacttg--attatagactaggtctata-tattgttgttgcttgagg-ttatttacatttggttattggttgtcattgatacttgctc 37168622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 3 - 198
Target Start/End: Complemental strand, 31925741 - 31925553
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgt-ttatcctttggttgaattgtgg 101  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||| ||||||||| |||||||    
T  31925741 agagtaggtcaa-gttggaccgaactaggtgaacatttcttggtgttgttattttttctttactctcgttatcttgtattattctttggttggattgtgg 31925643  T
Q  102 ctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctc 198  Q
     |||||||||||||||| ||| |||| ||  |||| ||| || |||||||||||||||       |||||||| |||||||||||||||||||||||    
T  31925642 ttttgctatgcacttgg-tttatagactaggtctatattattgttattgcttgtggtt------aatttggttgttggttgtcattgatacttgctc 31925553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 7482265 - 7482064
Alignment:
Q  2 cagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtgg 101  Q
    ||||||||||||  ||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||| | ||||||| |||||||    
T  7482265 cagagtaggtcaa-gttggaccgaactaggtgaacatttcatggtattgtcatcttttctttactctctttatcttgtttattccttggttggattgtgg 7482167  T
Q  102 ctttgctatgcacttggttttctagatta--tatctagattgtttttattgcttgtgg---tttacttacatttggttattggttgtcattgatacttgc 196  Q
     |||||||||||||||   || |||| ||  | | || |||||| || ||||||| ||   ||||| |  ||||||||||||||||||||||||||||||    
T  7482166 ttttgctatgcacttg--attatagactaggtctatatattgttgttgttgcttgaggttatttacattaatttggttattggttgtcattgatacttgc 7482069  T
Q  197 tccac 201  Q
    |||||    
T  7482068 tccac 7482064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 34603737 - 34603894
Alignment:
Q  44 ggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcacttggttttctagatta--tatctagattg 141  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |||||||||||||||   || |||| ||  | | || ||||    
T  34603737 ggtgttgttatcttttctttactctctttatcttgtttattccttggttggattgtggttttgctatgcacttg--attatagactaggtctatatattg 34603834  T
Q  142 tttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccaca 202  Q
     | ||  |||||| || ||| ||||||||| ||||||||||||||||||||||||||||||    
T  34603835 ctgttggtgcttgagg-ttatttacatttgattattggttgtcattgatacttgctccaca 34603894  T

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Target: chr1; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 42298011 - 42297888
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaac-atttcttggtgttgttatc---ttttctttactctctttatcttgtttatcctttggttgaat 96  Q
    |||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||   ||||||||||||| ||||||||||||||  |||||||| ||    
T  42298011 ccagagtaggtcatggttggaccgaactgggtgaacaatctcttggtgttgttgtctatttttctttactct-tttatcttgtttattatttggttggat 42297913  T
Q  97 tgtggctttgctatgcacttggttt 121  Q
    ||||  |||||||||||||||||||    
T  42297912 tgtgattttgctatgcacttggttt 42297888  T

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Target: chr1; HSP #15
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 19754641 - 19754737
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgca 113  Q
    ||||||||||| ||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||    
T  19754641 gttggaccgaagtgggtcaacaatttttggtgt-gttatcttttctttactctctttatcttgtttatccttttgttggattgtggttttgctatgca 19754737  T

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Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 12318556 - 12318463
Alignment:
Q  5 agtaggtcattgttggaccgaactgggtgaaca-tttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaatt 97  Q
    ||||| ||||| |||||||||||| ||| |||| ||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||    
T  12318556 agtagttcattattggaccgaactaggtaaacaattttttggtgttgttctcttttctttactccctttatcttgtttattctttggttcaatt 12318463  T

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Target: chr1; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 19752862 - 19752930
Alignment:
Q  49 tgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcacttg 117  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| ||||||| ||| |||||||||||    
T  19752862 tgttatcttttatttactctctttatcttgtttatccttttgttggattgtggttttactatgcacttg 19752930  T

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Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 193757 - 193849
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgtt-gttatcttttc-tttactctctttatcttgtttatcctttggttgaattgtggctttg 106  Q
    |||||||||||||||||||||||||||||||||| |||||||| || ||| || | |||||||||||||| | ||||||| ||||||| ||||    
T  193757 gttggaccgaactgggtgaacatttcttggtgttcgttatcttctcttttgctttatttatcttgtttattccttggttggattgtggttttg 193849  T

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Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 2926642 - 2926730
Alignment:
Q  2 cagagtaggtcattgttggaccgaactgggtgaacatttctt-ggtgttgttatcttttctttactctctttatcttgtttatcctttg 89  Q
    |||||||||||||||||| |||||||| ||| |||| ||||| ||||||||| | ||| || ||||||||||||||||||||| |||||    
T  2926642 cagagtaggtcattgttgcaccgaactaggtaaacaattctttggtgttgttctttttactctactctctttatcttgtttattctttg 2926730  T

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Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 6808586 - 6808726
Alignment:
Q  2 cagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtgg 101  Q
    |||||||||| |||||||| ||||||| | | || ||||||||| |||||| | | || | ||||||||||||||||||||| |||| |||  || |||     
T  6808586 cagagtaggttattgttggtccgaactagataaatatttcttggagttgttctttgttttctactctctttatcttgtttatgctttagtttgatagtga 6808685  T
Q  102 ctttgctatgcacttggttttctagattatatctagattgtt 143  Q
     |||||| | ||||||| ||||||||| | ||||||||||||    
T  6808686 ttttgctttacacttgg-tttctagatcagatctagattgtt 6808726  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 19752952 - 19753032
Alignment:
Q  168 tttggttattggttgtcattgatacttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||| ||||||| |||||||||||||| | ||| |||||   |||||||||||||||||||||||| | ||||||||||||    
T  19752952 tttggttgttggttgccattgatacttgcttcgcacatcatag--tttgtattggtgtgaaatttgagt-ctgaattcacaaca 19753032  T

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Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 19754772 - 19754826
Alignment:
Q  178 ggttgtcattgatacttgctccacacctcatataatttgtattggtgtgaaatttga 234  Q
    |||||||||||||||||||||||||| ||  ||| ||| ||||||||||||||||||    
T  19754772 ggttgtcattgatacttgctccacacatc--atagtttctattggtgtgaaatttga 19754826  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 25652225 - 25652308
Alignment:
Q  10 gtcattgttggaccgaactgggtgaacatttctt-ggtgttgttatcttttctttactctctttatcttgtttatcctttggtt 92  Q
    |||||||||| |||||||||| | |||| ||||| |||||||   |||||||| |||||||||||| ||||||||  |||||||    
T  25652225 gtcattgttgaaccgaactggataaacaattctttggtgttgccctcttttctctactctctttattttgtttattatttggtt 25652308  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 6398927 - 6398960
Alignment:
Q  167 atttggttattggttgtcattgatacttgctcca 200  Q
    |||||||||||||||| |||||||||||||||||    
T  6398927 atttggttattggttgccattgatacttgctcca 6398960  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 2263005 - 2262965
Alignment:
Q  6 gtaggtcattgttggaccgaactgggtgaacatttcttggt 46  Q
    ||||||||||||||| |||||||| || |||||||||||||    
T  2263005 gtaggtcattgttggtccgaactgagtaaacatttcttggt 2262965  T

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Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 17758171 - 17758402
Alignment:
Q  17 ttggaccgaactgggtgaacatttcttggtgttgttatcttttcttt-actctctttatcttgtttatcctttggttgaattgtggctttgctatgcact 115  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  17758171 ttggaccgaactaggtgaacatttcttggtgttgttatctttccttttacgctctttatcttgtttatcctttggttagattgtggttttgctatgcact 17758270  T
Q  116 tggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacctcatataattt 215  Q
    | ||||||||||||| |||||||||||| |||||||||| || ||| |||||||||||||||||||| |||||||||||||||||||| ||  ||| |||    
T  17758271 t-gttttctagattagatctagattgttgttattgcttgcgg-ttatttacatttggttattggttgccattgatacttgctccacacatc--atagttt 17758366  T
Q  216 gtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||||||||||||||||||| ||||||||||||    
T  17758367 gtattggtgtgaaatttgagtcccgaattcacaaca 17758402  T

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Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 17763138 - 17763371
Alignment:
Q  17 ttggaccgaactgggtgaacatttcttggtgttgttatcttttc-tttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcact 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||  ||||| | |||||||||||||    
T  17763138 ttggaccgaactaggtgaacatttcttggtgttgttatcttttcttttactctctttatcttgttcatcctttggttagattgtagttttgctatgcact 17763237  T
Q  116 tggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacctcatataattt 215  Q
    | ||| ||||||||| |||||||||||| |||||| |||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||  ||| |||    
T  17763238 t-gttatctagattagatctagattgttgttattgtttgt-gattatttacatttggttattggttgtcattgatacttgctccacacatc--atagttt 17763333  T
Q  216 gtattggtgtgaaatttgagtccggaattcacaacaca 253  Q
     |||||||||||||||||||||| ||||||||||||||    
T  17763334 atattggtgtgaaatttgagtcccgaattcacaacaca 17763371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 26800719 - 26800917
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||  ||||||    
T  26800719 ccagagtaggtcattgttggaccgaactggatgaacatttcttggtgttgttatcttttctctactctttttatcttgtttatcttttggttagattgtg 26800818  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcca 200  Q
    | |||||||||||||| |||||||||| || |||||||||||| ||||||||||||| | | |||||||||||||||||||| |||||||||||||||||    
T  26800819 gttttgctatgcactt-gttttctagactagatctagattgttgttattgcttgtgg-taatttacatttggttattggttgccattgatacttgctcca 26800916  T

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Target: chr6; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 5043763 - 5044006
Alignment:
Q  5 agtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||| ||    
T  5043763 agtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatttcttggttggattgtggttt 5043862  T
Q  105 tgctatgcacttggttttctagatta--tatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccaca 202  Q
    |||||||||||||   || |||| ||  | | || |||||| || ||||||| || ||| |||||||||||||||||||||||||||||| |||||||||    
T  5043863 tgctatgcacttg--attatagaataggtctatatattgttgttgttgcttgagg-ttatttacatttggttattggttgtcattgatacgtgctccaca 5043959  T
Q  203 cctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    | ||  ||| |||||||||||||||||||| |||| |||||||||||||    
T  5043960 catc--atagtttgtattggtgtgaaatttaagtcaggaattcacaaca 5044006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 22424861 - 22424626
Alignment:
Q  2 cagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtgg 101  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||  |||||||    
T  22424861 cagagtaggtcattgttggaccgtactgggtgaacatttcttggtgttgttatcttttctctactctctttatcttgtttatccttaggttagattgtgg 22424762  T
Q  102 --ctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcc 199  Q
       ||| | |||||||||| |||||| |||| |||||||||||| || ||| |||||| ||| |||||||||||||||||||  ||||||||||||||||    
T  22424761 tttttttcaatgcacttgg-tttctatattagatctagattgttgttgttgtttgtgg-ttatttacatttggttattggttaccattgatacttgctcc 22424664  T
Q  200 acacctcatataatttgtattggtgtgaaatttgagtccg 239  Q
    |||| ||  ||| ||||||||  |||||||||||||||||    
T  22424663 acacatc--atagtttgtattaatgtgaaatttgagtccg 22424626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 26830137 - 26829909
Alignment:
Q  24 gaactgggtgaacatttcttggtgttgttatcttttctttactctct--ttatcttgtttatcctttggtt-gaattgtggctttgctatgcacttggtt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| | ||| || | ||||||| ||||||||||||||||||    
T  26830137 gaactgggtgaacatttcttggtgttgttatcttttctttactctctctttatcttgtttattccttgctttggattgtggttttgctatgcacttggtt 26830038  T
Q  121 ttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacctcatataatttgtatt 220  Q
    |  |||| ||  | || |||||| ||||||||||||||| | |||||||||||||||||||  |||||||||||||||||||| ||||||| ||||||||    
T  26830037 ta-tagactaggtttatattgttgttattgcttgtggtt-atttacatttggttattggtttccattgatacttgctccacacatcatatagtttgtatt 26829940  T
Q  221 ggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||||||||||| || ||||||||||||    
T  26829939 ggtgtgaaatttgagccccgaattcacaaca 26829909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 21589063 - 21589308
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| | || |||| ||||||    
T  21589063 ccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactttccttatcttgtttattccttagttggattgtg 21589161  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcca 200  Q
    | |||||||||||||||| ||| |||| ||  |||| |||||| ||||||||||||||| || |   ||||||| ||||||  |||||||||||||||||    
T  21589162 gttttgctatgcacttgg-tttatagactaggtctatattgttgttattgcttgtggttaacat-tttttggttgttggtttccattgatacttgctcca 21589259  T
Q  201 cacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||| ||  ||| ||| |||||||||||||||||||||| ||||||||||||    
T  21589260 cacatc--atagtttatattggtgtgaaatttgagtccagaattcacaaca 21589308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3808744 - 3808518
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatt-tcttggtgttgttatct---tttctttactctctttatcttgtttatcctttggttgaat 96  Q
    ||||||||||||||  |||||||||||| |||||||| | |||||| |||||| |||   ||||| ||||||||||||||||||||||||||||||  ||    
T  3808744 ccagagtaggtcatgattggaccgaactaggtgaacaatctcttggggttgttgtctatttttctctactctctttatcttgtttatcctttggttagat 3808645  T
Q  97 tgtggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgc 196  Q
    | ||| ||||||||||| || ||||||||||||| ||||||||||||  |||||||| ||| ||| ||||||||| |||||||||| |||||||||||||    
T  3808644 tatggttttgctatgca-tttgttttctagattagatctagattgttgctattgcttttgg-ttatttacatttgattattggttgccattgatacttgc 3808547  T
Q  197 tccacacctcatataatttgtattggtgtga 227  Q
    ||||||  ||  ||| |||||||||||||||    
T  3808546 tccacatatc--atagtttgtattggtgtga 3808518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 198
Target Start/End: Complemental strand, 2972973 - 2972777
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttcttta----ctctctttatcttgtttatcctttggttgaattg 98  Q
    |||||||||||  ||| ||||||||| ||||||||||||||||||||||||| |||| ||||    |||||| ||||||||||||| |||||||  ||||    
T  2972973 agagtaggtcaa-gttcgaccgaactaggtgaacatttcttggtgttgttat-ttttttttactctctctctatatcttgtttatcatttggttagattg 2972876  T
Q  99 tgg-ctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgct 197  Q
    |||  ||| |||||||||| | ||| |||| ||  |||| |||||| || ||| |||||| ||| ||||||||| |||||||||| ||||||||||||||    
T  2972875 tggttttttctatgcacttag-tttatagactaggtctatattgttgttgttgtttgtgg-ttatttacatttgattattggttgccattgatacttgct 2972778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 21593796 - 21593860
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttact 66  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21593796 ccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttact 21593860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 603110 - 603005
Alignment:
Q  16 gttggaccgaactgggtgaacatt-tcttggtgttgttatct---tttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatg 111  Q
    ||||||||||||||||| |||| | ||||| ||||||| |||   ||||| ||||||||||||||||||||| | ||||||| ||||||| ||| |||||    
T  603110 gttggaccgaactgggtcaacaatctcttgatgttgttgtctatttttctctactctctttatcttgtttatgccttggttggattgtggttttactatg 603011  T
Q  112 cacttg 117  Q
    ||||||    
T  603010 cacttg 603005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 9572725 - 9572862
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaac-atttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtgg 101  Q
    ||||||||||||  ||| | |||||||||| ||  |||||||| |||||||||||||||| |  | |||||||||| | ||| ||||| ||  |||||||    
T  9572725 agagtaggtcatcattgaaacgaactgggtaaaatatttcttgatgttgttatcttttctctcgtgtctttatcttatctattctttgattcgattgtgg 9572824  T
Q  102 ctttgctatgcacttggttttctagattatatctagatt 140  Q
      || |||||||||||| ||||||||||| |||||||||    
T  9572825 tatttctatgcacttgg-tttctagattagatctagatt 9572862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 602975 - 602903
Alignment:
Q  176 ttggttgtcattgatacttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||| |||||||||||||||||||| ||  ||| |||||||||||||||  ||||||||| ||||||||||||    
T  602975 ttggttgccattgatacttgctccacacatc--atagtttgtattggtgtgagttttgagtcc-gaattcacaaca 602903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 12221131 - 12221094
Alignment:
Q  11 tcattgttggaccgaactgggtgaacatttcttggtgt 48  Q
    |||||||||||||||||||||| |||||||||||||||    
T  12221131 tcattgttggaccgaactgggtaaacatttcttggtgt 12221094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 25073754 - 25073798
Alignment:
Q  48 ttgttatcttttctttactctctttatcttgtttatcctttggtt 92  Q
    ||||| |||||||| | ||||||||||||||||||| ||||||||    
T  25073754 ttgttctcttttctctgctctctttatcttgtttattctttggtt 25073798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 11384131 - 11384366
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgttgt-tatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcac 114  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||    
T  11384131 gttggaccgaactgggtgaacattttttggtgttgtctat-ttttctttactctctttatcttgtttatcctttggttagattgtggttttgctatgcac 11384229  T
Q  115 ttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacctcatataatt 214  Q
    || ||||||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||||| |||||| |||||||| |||||||| ||||||||||    
T  11384230 tt-gttttctagattagatctagattgttgttattgcttgtgg-ttatttacatttggttattgcttgtcaatgatacttactccacacatcatataatt 11384327  T
Q  215 tg--tattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||  |||||||||||||||||||||| || |||||||||    
T  11384328 tgtatattggtgtgaaatttgagtccagagttcacaaca 11384366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 40328923 - 40329102
Alignment:
Q  17 ttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcactt 116  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||  ||||||| ||||||||||||||    
T  40328923 ttggacggaactgagtgaacatttcttggtgttgttatcttttctctactctccttttcttgtttatcctttggttagattgtggttttgctatgcactt 40329022  T
Q  117 ggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctc 198  Q
     ||||||||||||| ||||||| |||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  40329023 -gttttctagattagatctagactgttgttattgcttgtgg-ttatttacatttggttgttggttgtcattgatacttgctc 40329102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 160
Target Start/End: Original strand, 4283658 - 4283813
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggc 102  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4283658 agagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggt 4283756  T
Q  103 tttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggttt 160  Q
    |||||||||||||||| ||| |||| ||  |||| |||||| ||||||||||||||||    
T  4283757 tttgctatgcacttgg-tttatagactaggtctatattgttgttattgcttgtggttt 4283813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 18655546 - 18655734
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgttgttatcttttcttta--ctctctttatcttgttta-tcctttggttgaattgtggctttgctatgc 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||| |||||   ||| ||||||| ||||||||||    
T  18655546 gttggaccgaactgggtgaacattttttggtgttgttatcttttctttactctctctttatcttgtttattccttgctttggattgtggttttgctatgc 18655645  T
Q  113 acttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacac 203  Q
    |||||| ||| |||| || ||||| |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||    
T  18655646 acttgg-tttatagactagatctatattgttgttattgcttgt-gtttatttacatttggttattggttgtcattgatatttgctccacac 18655734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 42435027 - 42434779
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgttta-tcctttggttgaattgt 99  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||   ||| |||||    
T  42435027 ccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactttctttatcttgtttattccttgctttggattgt 42434929  T
Q  100 ggctttgctatgcacttggttttctagattatatcta--gattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgct 197  Q
    || |||||||||||||||   || |||| ||  ||||   |||||| || |||||||||||| ||  |  ||||||| ||||||| ||||||||||||||    
T  42434928 ggttttgctatgcacttg--attatagactaggtctatctattgttgttgttgcttgtggttaac--atttttggttgttggttgccattgatacttgct 42434833  T
Q  198 ccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    || ||| ||||||| |||||||||||||||||||||||| |  |||||||||||    
T  42434832 cctcacatcatatagtttgtattggtgtgaaatttgagttccaaattcacaaca 42434779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 3772325 - 3772521
Alignment:
Q  2 cagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtgg 101  Q
    ||||||||||||  |||||||| |||||| | || ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||  |||||||    
T  3772325 cagagtaggtcaa-gttggaccaaactggataaatatttcttggtggtgttatcttttctctactctctttatcttgtttattctttggttagattgtgg 3772423  T
Q  102 ctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccac 201  Q
     |||||||||||||| | ||||||||||| |||||||||||| || |||||||||| ||| || | |||||| |||||||| ||||||||| ||||||||    
T  3772424 ttttgctatgcactt-gatttctagattaaatctagattgttgttgttgcttgtgg-ttattttcttttggtgattggttgccattgatacctgctccac 3772521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 40221891 - 40221992
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcact 115  Q
    ||||||||||||||||| || | |  |||||||||||||||| |||||||||||||||||||||| || ||||||||| ||||||| |||||||||||||    
T  40221891 gttggaccgaactgggtcaataatctttggtgttgttatcttgtctttactctctttatcttgttcattctttggttggattgtggttttgctatgcact 40221990  T
Q  116 tg 117  Q
    ||    
T  40221991 tg 40221992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 10930221 - 10930118
Alignment:
Q  16 gttggaccgaactgggtgaaca-tttcttggtgttgttatcttttcttta-ctctctttatcttgtttatcctttggttgaattgtggctttgctatgca 113  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||  ||| ||||||||||||||| |||| |||| ||||||| |||||||||||    
T  10930221 gttggaccgaactgggtcaacaatttcttggtgttgttatcttttcttttgctccctttatcttgtttattcttttgttggattgtggttttgctatgca 10930122  T
Q  114 cttg 117  Q
    ||||    
T  10930121 cttg 10930118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 2999820 - 2999723
Alignment:
Q  20 gaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcacttg 117  Q
    |||||||||| || ||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||||  ||||||  |||||||||||||||    
T  2999820 gaccgaactgagtaaacatttcttgatgttgatatcttttctctactctctttatcttgtttattctttggttagattgtgattttgctatgcacttg 2999723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 10240263 - 10240411
Alignment:
Q  9 ggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgttta-tcctttggttgaattgtggctttgc 107  Q
    ||||||||||||| | |||| ||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||| |  |||||||  ||||||| |||||    
T  10240263 ggtcattgttggatcaaactaggtaaacatttcttggttttgttctcttttcttcactctctttatcttgtttatttttttggttcgattgtggttttgc 10240362  T
Q  108 tatgcacttggttttctagattatatctagattgtttttattgcttgtgg 157  Q
    | | || || | ||||||||||| |||||||||||| |||||| ||||||    
T  10240363 tttacatttcg-tttctagattagatctagattgttgttattgtttgtgg 10240411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 9633640 - 9633551
Alignment:
Q  5 agtaggtcattgttggaccgaactgggtgaacatttctt-ggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    ||||||||||||||||||||||||| || |||| ||||| ||||||||| |||       |||||||||||||||||||| |||||||| |||||||    
T  9633640 agtaggtcattgttggaccgaactgtgtaaacaattctttggtgttgttttct-------actctctttatcttgtttattctttggttcaattgtg 9633551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 4743069 - 4743023
Alignment:
Q  208 tataatttgtattggtgtgaaatttgagtccggaattcacaacacaaa 255  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||    
T  4743069 tatagtttgtattggtgtgagatttgagtcc-gaattcacaacacaaa 4743023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 4283819 - 4283872
Alignment:
Q  197 tccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||| ||||||| ||||||||||||| ||||||||| || ||||||||||||    
T  4283819 tccacacatcatatagtttgtattggtgtaaaatttgagacc-gaattcacaaca 4283872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 4508728 - 4508499
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcact 115  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4508728 gttggaccgaactgggtgaacatttcttggtgttgttatattttctttactctctttatcttgtttatcctttggttgaattgtggttttgctatgcact 4508629  T
Q  116 tggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacctcatataattt 215  Q
    ||| ||| |||| ||  |||| |||||| ||||||||||||||||| ||| |||||||||||||||| |||||||||||||| || || ||  ||| |||    
T  4508628 tgg-tttatagactaggtctatattgttgttattgcttgtggtttatttatatttggttattggttggcattgatacttgcttcatacttc--atagttt 4508532  T
Q  216 gtattggtgtgaaatttgagtccggaattcacaa 249  Q
    |||||||||||||||||||| || ||||||||||    
T  4508531 gtattggtgtgaaatttgagacc-gaattcacaa 4508499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 34310752 - 34310496
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttat-cctttggttgaattgt 99  Q
    |||||||||||||   ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34310752 ccagagtaggtcaagtttggaccgaactgggtgaacaatctttggtgttgttatcttttctttactctctttatcttgtttattcctttggttgaattgt 34310653  T
Q  100 ggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcc 199  Q
    || |||||||||||||||||||  |||| ||  |||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  34310652 ggttttgctatgcacttggttta-tagactaggtctatattgttgttattgcttgtggtctatttacatttggttattggttgtcattgatacttgctcc 34310554  T
Q  200 acacctcatata------atttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    |||| |||||||      | ||||||||||||||| ||||| ||||||||||||||||    
T  34310553 acacatcatatagtttgtaattgtattggtgtgaactttgaatccggaattcacaaca 34310496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 4510582 - 4510339
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggc 102  Q
    |||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||      
T  4510582 agagtaggtcaa-gttggaccgtactgggtgaacatttcttggtgttgttatcttttctttactctcttgatcttgtttatccattagttgaattgtgtt 4510484  T
Q  103 tttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccaca 202  Q
    |||||||||||||| | ||| |||| ||  |||| |||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  4510483 tttgctatgcactt-gatttatagactaggtctatattgttgttattgcttgtggtttatttacatttggttattggttgccattgatacttgctccaca 4510385  T
Q  203 cctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    | ||  ||| |||||||||||||||||||||||||| ||||||||||||    
T  4510384 catc--atagtttgtattggtgtgaaatttgagtcc-gaattcacaaca 4510339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 4512424 - 4512181
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggc 102  Q
    |||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||      
T  4512424 agagtaggtcaa-gttggaccgtactgggtgaacatttcttggtgttgttatcttttctttactctcttgatcttgtttatccattagttgaattgtgtt 4512326  T
Q  103 tttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccaca 202  Q
    |||||||||||||| | ||| |||| ||  |||| |||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  4512325 tttgctatgcactt-gatttatagactaggtctatattgttgttattgcttgtggtttatttacatttggttattggttgccattgatacttgctccaca 4512227  T
Q  203 cctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    | ||  ||| |||||||||||||||||||||||||| ||||||||||||    
T  4512226 catc--atagtttgtattggtgtgaaatttgagtcc-gaattcacaaca 4512181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 8359352 - 8359157
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||  ||||||    
T  8359352 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctctactctcattatcttgtttatcctttggttagattgtg 8359253  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcca 200  Q
    | |||||||||||||| ||||||||||||| |||||||||||| || ||||||||| ||||||    |||| || ||||||| |||||||||||||||||    
T  8359252 gttttgctatgcactt-gttttctagattagatctagattgttgttgttgcttgtgatttact----tttgattgttggttgccattgatacttgctcca 8359158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 3259127 - 3259322
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||    
T  3259127 ccagagtaggtcaa-gttgaaccgaactgggtgaacatttcctggtgttgttatcttttctttactctctttatcttgtttattccttggttggattgtg 3259225  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcc 199  Q
    | |||||||||| | | ||||||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  3259226 gttttgctatgcccgt-gttttctagattagatctagattgttgttattgcttgtgg-ttatttacatttggttattggttgtcattgatacttgctcc 3259322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 32358090 - 32357848
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||    
T  32358090 ccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttaacttgtttattccttgcttgaattgtg 32357992  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcca 200  Q
    | |||| |||||| ||||  || || | ||  |||| ||| || || |||||||||||||||     ||||||| ||||||||||||||||||| |||||    
T  32357991 gttttgttatgcaattgg-attataaactaggtctatattattgttgttgcttgtggtttac-----tttggttgttggttgtcattgatacttactcca 32357898  T
Q  201 cacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||| ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  32357897 cacatcatataatttgtattggtgtgaaatttgtgtcc-gaattcacaaca 32357848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 2390414 - 2390615
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaa-catttcttggtgttgttat---cttttctttactctctttatcttgtttatcctttggttgaat 96  Q
    |||||||||||||  ||||||||||||| ||||||  || ||||||||||||| |    |||||| |||||||||||||||||||||||||| |||| ||    
T  2390414 ccagagtaggtcaa-gttggaccgaactaggtgaataatctcttggtgttgttgtttatttttctctactctctttatcttgtttatccttttgttggat 2390512  T
Q  97 tgtggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgc 196  Q
    ||||| |||||||| || || ||||||||||||| |||||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||||||||    
T  2390513 tgtggttttgctataca-tttgttttctagattagatctagattgttgttattgattgtgg-ttatttacatttggttattggttgtcattgatacttgc 2390610  T
Q  197 tccac 201  Q
    |||||    
T  2390611 tccac 2390615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 22328424 - 22328282
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggc 102  Q
    |||||||||||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||| |||| |||  |||||||     
T  22328424 agagtaggtcattgttggaccgaactgggtaaatattttttggtgttgttatcttttctctactctctttatcttgtttattcttttgttcgattgtggt 22328325  T
Q  103 tttgctatgcacttggttttctagattatatctagattgttttt 146  Q
    |||| ||||||||||| ||||| ||||| |||||||||||||||    
T  22328324 tttgttatgcacttgg-tttctcgattagatctagattgttttt 22328282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 29608869 - 29609060
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  |||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  ||||||    
T  29608869 ccagagtaggtcaa-gttggaccgaactgagtgaatatttcttggtgttgttatcttttctctactctctttatcttgtttatcctttgcttagattgtg 29608967  T
Q  101 g-ctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcc 199  Q
    |  |||| ||||||||||| |||||| |||| |||||||||||| || |||||||||| ||| ||||||       ||||||||||||||||||||||||    
T  29608968 gtttttgatatgcacttgg-tttctatattagatctagattgttgttgttgcttgtgg-ttatttacat-------ttggttgtcattgatacttgctcc 29609058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 54 - 238
Target Start/End: Complemental strand, 2360960 - 2360784
Alignment:
Q  54 tcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcacttggttttctagattatatctagattgtttttattgctt 153  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||||| |||| ||||||||||| |||||||| ||  |||| |||| | || ||||||    
T  2360960 tcttttctttattctctttatcttgtttattccttggttgaattgtggttttgatatgcacttgg-tttctagactaggtctatattgatgttgttgctt 2360862  T
Q  154 gtggtttacttacatttggttattggttgtcattgatacttgctccacacctcatataatttgtattggtgtgaaatttgagtcc 238  Q
    ||| |||||     ||||||| ||||||| |||||||||||||||||||| ||  ||| |||||||||||||||| |||||||||    
T  2360861 gtgatttac-----tttggttgttggttgccattgatacttgctccacacatc--atagtttgtattggtgtgaattttgagtcc 2360784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 48599356 - 48599255
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcact 115  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| ||||| | |||||| ||||||    
T  48599356 gttggaccgaactgggtgaacatttcttgatgttgttatcttttctttactctctttatcttgtttattccttggttggattgtagttttgctgtgcact 48599257  T
Q  116 tg 117  Q
    ||    
T  48599256 tg 48599255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 6359974 - 6359762
Alignment:
Q  16 gttggaccgaactgggtgaaca-tttcttggtgttgttatcttttc-tttactctctttatcttgtttat-cctttggttgaattgtggctttgctatgc 112  Q
    |||||| |||||||||| |||| ||||||||||||||||||||||| ||| || |||||||||||||||| ||||  |||| ||||||| ||||||||||    
T  6359974 gttggatcgaactgggtcaacaatttcttggtgttgttatcttttcatttgctttctttatcttgtttattccttaagttggattgtggttttgctatgc 6359875  T
Q  113 acttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacctcatataa 212  Q
    |||||||||  |||| ||  | || ||| || || |||||||||||||||||     ||||| ||||||  |||||||||||||||||||| ||  |||     
T  6359874 acttggttta-tagactaggtatatattattgttgttgcttgtggtttactt-----tggttgttggttcccattgatacttgctccacacatc--atag 6359783  T
Q  213 tttgtattggtgtgaaatttg 233  Q
    ||||||||| |||||| ||||    
T  6359782 tttgtattgatgtgaagtttg 6359762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 30814690 - 30814770
Alignment:
Q  168 tttggttattggttgtcattgatacttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||  |||||| ||||||||||||||||||| ||||||||||||    
T  30814690 tttggttgttggttgccattgatacttgctccacacatcatat--tttgtactggtgtgaaatttgagtcc-gaattcacaaca 30814770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 22270241 - 22270310
Alignment:
Q  168 tttggttattggttgtcattgatacttgctccacacctcatataatttgtattggtgtgaaatttgagtccg 239  Q
    ||||||| ||||||| |||||||||||||||||||| ||  ||| ||||||||| |||||||||||||||||    
T  22270241 tttggttgttggttgccattgatacttgctccacacatc--atagtttgtattgctgtgaaatttgagtccg 22270310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 22552485 - 22552448
Alignment:
Q  169 ttggttattggttgtcattgatacttgctccacacctc 206  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  22552485 ttggttattagttgtcattgatacttgctccacacctc 22552448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 6430432 - 6430496
Alignment:
Q  184 cattgatacttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    |||||||||||||||||||| ||  ||| |||||||||||||||  ||||||||| ||||||||||||    
T  6430432 cattgatacttgctccacacatc--atagtttgtattggtgtgagttttgagtcc-gaattcacaaca 6430496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22270105 - 22270151
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgt 48  Q
    |||||||||||||  ||||||||||||||||||||||| |||||||||    
T  22270105 ccagagtaggtcaa-gttggaccgaactgggtgaacatctcttggtgt 22270151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 1360154 - 1360051
Alignment:
Q  56 ttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcacttggttttctagattatatct-agattgtttttattgcttg 154  Q
    |||||| || |||||||||||||||| | |||| |||  ||||||| |||||| | ||||| ||||| ||||||| |||| | |||||| || |||||||    
T  1360154 ttttctctattctctttatcttgtttcttcttttgttcgattgtggttttgctttacacttagtttt-tagattagatctaaaattgttgttgttgcttg 1360056  T
Q  155 tggtt 159  Q
    |||||    
T  1360055 tggtt 1360051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 3904652 - 3904624
Alignment:
Q  2 cagagtaggtcattgttggaccgaactgg 30  Q
    |||||||||||||||||||||||||||||    
T  3904652 cagagtaggtcattgttggaccgaactgg 3904624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 18024 - 17793
Alignment:
Q  17 ttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgttta-tcctttggttgaattgtggctttgctatgcact 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||| ||||||||||| |    
T  18024 ttggatcgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttattcctttggttagattgtggttttgctatgca-t 17926  T
Q  116 tggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacctcatataattt 215  Q
    | ||||||||||||| |||||||||||| ||||||||||||| ||| ||||||||| ||||||||||  ||||||||||||| ||||| ||  ||| |||    
T  17925 ttgttttctagattagatctagattgttgttattgcttgtgg-ttatttacatttgattattggttgctattgatacttgctacacacatc--atagttt 17829  T
Q  216 gtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||||||||||||||||||| ||||||| ||||    
T  17828 gtattggtgtgaaatttgagtccagaattcataaca 17793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 45727061 - 45727305
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||  |||| ||||||||| ||||||    
T  45727061 ccagagtaggtcaa-gttggaccgaactgggtgaacattttttagtgttgttatcttttctttactctctttatctt--ttattctttggttggattgtg 45727157  T
Q  101 gctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcca 200  Q
    | |||||||||||||| ||||  |||| ||  |||| ||| || || |||||||||||||| ||||||||||||||| |||| |||||||||||||||||    
T  45727158 gttttgctatgcacttagttta-tagactaggtctatattattgttgttgcttgtggtttatttacatttggttattagttgccattgatacttgctcca 45727256  T
Q  201 cacctcatataatttgtattggtgtgaaatttgagtccggaattcacaac 250  Q
    ||| ||||||| |||||||||||||||||||||||| | |||||||||||    
T  45727257 cacatcatatagtttgtattggtgtgaaatttgagt-ctgaattcacaac 45727305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 35446920 - 35446675
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35446920 ccagagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatgctttggttgaattgtg 35446822  T
Q  101 gctttgctatgcacttggttttctagattatatc--tagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctc 198  Q
    | |||||||||||||||   || |||| || |||  || |||||| || |||  ||||||||||     ||||||| |||||||  ||||||||||||||    
T  35446821 gttttgctatgcacttg--attatagactagatctatatattgttgttgttgagtgtggtttac-----tttggttgttggttgggattgatacttgctc 35446729  T
Q  199 cacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaacaca 253  Q
    ||||| ||||||| ||| ||||| |||||||||||||| | ||||||||||||||    
T  35446728 cacacatcatatagtttatattgatgtgaaatttgagt-cagaattcacaacaca 35446675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 42288133 - 42287953
Alignment:
Q  16 gttggaccgaactgggtgaaca-tttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcac 114  Q
    ||||||||||||||||| || | |||||||||| ||||||||||||||||| ||||||| ||||||||| | ||||||| ||||||| ||| ||||||||    
T  42288133 gttggaccgaactgggtcaataatttcttggtgctgttatcttttctttaccctctttaacttgtttattccttggttggattgtggtttttctatgcac 42288034  T
Q  115 ttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgct 197  Q
    || ||||||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||| |||||    
T  42288033 tt-gttttctagattagatctagattgttgttattgcttgtgg-ttatttacatttggttattggttgccattgatatttgct 42287953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 17450710 - 17450898
Alignment:
Q  2 cagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtgg 101  Q
    ||||||||||||  ||||||||||||| |||||||| |  |||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||    
T  17450710 cagagtaggtcaa-gttggaccgaactaggtgaacaatctttggtgttgttatcttttctgtactctctttatcttgtttatcctttggttagattgtgg 17450808  T
Q  102 ctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgc 196  Q
     |||||||||||||||| |||||||||||  | ||||||||| || |||||||||    | |||||||||||||| |||||||||||||||||||    
T  17450809 ttttgctatgcacttgg-tttctagattaggtttagattgttgttgttgcttgtg----atttacatttggttatcggttgtcattgatacttgc 17450898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 1631768 - 1631520
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  |||||||||||||| ||||| ||||||| |||||||||||||||| || ||||||||||||||||||| | ||  ||| ||||||    
T  1631768 ccagagtaggtcaa-gttggaccgaactgagtgaatatttcttagtgttgttatcttttccttgctctctttatcttgtttattcctt--ttggattgtg 1631672  T
Q  101 gctttgctatgcacttggttttctagattatatctagat--tgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctc 198  Q
    | |||||||| |||||| ||    ||| ||  |||| ||  |||| ||||||||||||||||| ||| |||||||| ||||||||||||||||||| |||    
T  1631671 gttttgctatacacttgattac--agactaagtctatatattgttgttattgcttgtggtttatttatatttggttgttggttgtcattgatacttactc 1631574  T
Q  199 cacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaacac 252  Q
    ||||| ||||||| ||||||||| |||||||||||| ||| | |||||||||||    
T  1631573 cacacatcatatagtttgtattgatgtgaaatttgaatcccggattcacaacac 1631520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33648304 - 33648421
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||| ||| |||||||    
T  33648304 ccagagtaggtcattgttggaccgaactgggtaaacatttattggtgttgttgtcttttctctactctctttatcttgtttattctttagtttaattgtg 33648403  T
Q  101 gctttgctatgcacttgg 118  Q
      ||||||||||||||||    
T  33648404 attttgctatgcacttgg 33648421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 7451270 - 7451448
Alignment:
Q  23 cgaactgggtgaacatttcttggtgttgt-tatcttttctttactctct--ttatcttgtttatcctttggttgaattgtggctttgctatgcacttggt 119  Q
    |||||||||||||||||| |||||||||| ||| |||||| ||||||||  ||||||||||||| ||||||||  ||||||| |||| |||||||||| |    
T  7451270 cgaactgggtgaacatttattggtgttgtctat-ttttctctactctctctttatcttgtttattctttggttcgattgtggttttgttatgcacttg-t 7451367  T
Q  120 tttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccac 201  Q
    ||||||||||| |||||||||||| ||||||||||||||| | | |||   ||||||||||||||||||| |||||||||||    
T  7451368 tttctagattagatctagattgttgttattgcttgtggtt-attgacaagaggttattggttgtcattgaaacttgctccac 7451448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 24398194 - 24398332
Alignment:
Q  5 agtaggtcattgttggaccgaactgggtgaac-atttcttggtgttgttatc---ttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||||||||||   |||||| ||||||||||||||||||||  | |||||   |||| |    
T  24398194 agtaggtcattgttggaccgaactggctgaacaattacttggtgttgttatctatttttctctactctctttatcttgtttagtc-ttggtccgattgcg 24398292  T
Q  101 gctttgctatgcacttggttttctagattatatctagattg 141  Q
    | |||||||||||||| | ||||||||||| || |||||||    
T  24398293 gttttgctatgcacttag-tttctagattagatttagattg 24398332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 30218080 - 30217923
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||| ||||||||||||| ||||| ||| ||||||| ||||||| | | | |||||| ||||||||||||||||||||| ||||||||  ||||||    
T  30218080 ccagagtaagtcattgttggactgaactcggtaaacattttttggtgtagctct-ttttctctactctctttatcttgtttattctttggtttgattgtg 30217982  T
Q  101 gctttgctatgcacttggttttctagattatatctag-attgtttttattgcttgtggtt 159  Q
    | | || | | ||||||| ||||||||||  |||||| | || |||| ||||||||||||    
T  30217981 gttgtgttttacacttgg-tttctagattggatctagaaatgattttgttgcttgtggtt 30217923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 42261464 - 42261384
Alignment:
Q  56 ttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcacttggttttctagattatatctagat 139  Q
    ||||||||||||||||||||||| ||||  |||||||   |||||| |||||||| ||||||| || |||||||| ||||||||    
T  42261464 ttttctttactctctttatcttgattat--tttggtttgtttgtggttttgctatacacttgg-ttgctagattagatctagat 42261384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 29868182 - 29868241
Alignment:
Q  193 ttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaacacaaa 255  Q
    ||||||||||| |||||   ||||||||| |||||||||||||||| ||||||||||||||||    
T  29868182 ttgctccacacatcatag--tttgtattgctgtgaaatttgagtcc-gaattcacaacacaaa 29868241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12123622 - 12123578
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttgg 45  Q
    |||||||| |||||||||||||||||||| || || |||||||||    
T  12123622 ccagagtaagtcattgttggaccgaactgagtaaatatttcttgg 12123578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 7473 - 7703
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcact 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7473 gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggttttgctatgcact 7572  T
Q  116 tggttttctagatta--tatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacctcatataat 213  Q
    ||| ||| |||| ||  | | || ||| || || |||||||||||||||     ||||||| ||||||| |||||||||||||||||||| ||  ||| |    
T  7573 tgg-tttatagactaggtctatatattattgttgttgcttgtggtttac-----tttggttgttggttgccattgatacttgctccacacatc--atagt 7664  T
Q  214 ttgtattggtgtgaaatttgag-tccggaattcacaaca 251  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  7665 ttgtattggtgtgaaatttgagttccgaaattcacaaca 7703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 8e-49; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 27637648 - 27637487
Alignment:
Q  2 cagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtgg 101  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || |||| |||||||    
T  27637648 cagagtaggtcattgttggaccgaactgggtgaatatttcttggtgttgttatcttttctttactctctttatcttgtttattccttagttggattgtgg 27637549  T
Q  102 ctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttactt 164  Q
     |||||||||||||||| ||| |||| ||  |||| |||||| || ||||||||| |||||||    
T  27637548 ttttgctatgcacttgg-tttatagactaggtctatattgttgttgttgcttgtgatttactt 27637487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 5058179 - 5058423
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgttta-tcctttggttgaattgtgg 101  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||| ||| |||    
T  5058179 agagtaggtcaa-gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttattccttgctttggattatgg 5058277  T
Q  102 ctttgctatgcacttggttttctagatta--tatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcc 199  Q
     ||| |||||||||||   || |||| ||  | | || |||||| || |||||||||||| ||  |  ||||||| ||||||| |||||||||||| |||    
T  5058278 ttttactatgcacttg--attatagactaggtctatatattgttgttgttgcttgtggttaac--atttttggttgttggttgccattgatacttgttcc 5058373  T
Q  200 acacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    |||| ||  ||||||| |||||||||||||||||||| || |||||||||||    
T  5058374 acacatc--ataatttatattggtgtgaaatttgagttcgaaattcacaaca 5058423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 40147393 - 40147508
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    |||||||||||||  ||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40147393 ccagagtaggtcaa-gttggaccgaactgggtgaacatttttttgtgtttttatcttttctttactctatttatcttgtttatcctttggttgaattgtg 40147491  T
Q  101 gctttgctatgcacttg 117  Q
    | |||| ||||||||||    
T  40147492 gttttgttatgcacttg 40147508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 27015669 - 27015896
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcact 115  Q
    ||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||    
T  27015669 gttggaccgaactgggtgaacattttttggtgt-gttattttttctttactctctttatcttgtttatgctttggttgaattgtggttttgatatgcact 27015767  T
Q  116 tggttttctagatta--tatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacacctcatataat 213  Q
    ||   || |||| ||  ||| || |||||| || ||||||||| |||||     ||||||| ||| ||| |||| ||||||||||||| | ||  ||| |    
T  27015768 tg--attatagactaggtatatatattgttgttgttgcttgtgatttac-----tttggttgttgattgccattaatacttgctccacccatc--atagt 27015858  T
Q  214 ttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    |||| ||| ||||||||||| ||||  |||||||||||    
T  27015859 ttgttttgctgtgaaatttgggtcccaaattcacaaca 27015896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 88 - 251
Target Start/End: Original strand, 40751195 - 40751351
Alignment:
Q  88 tggttgaattgtggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcatt 187  Q
    ||||| |||||||| |||||||||||||||||||  |||||||  |||| |||||| ||||||||||||||||||    |||||||||||||||||||||    
T  40751195 tggttaaattgtggttttgctatgcacttggttta-tagattaggtctatattgttgttattgcttgtggtttac----atttggttattggttgtcatt 40751289  T
Q  188 gatacttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||| |||||||  ||  ||| ||||||||||||||| |||| ||||||||||||||||||    
T  40751290 gatacttactccacaaatc--atagtttgtattggtgtgagatttaagtccggaattcacaaca 40751351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 213613 - 213800
Alignment:
Q  17 ttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctct--ttatcttgtttatcctttggttga-attgtggctttgctatgca 113  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||| | ||| ||   ||||||| |||||||||||    
T  213613 ttggaccgaactgggtgaacatttcttggtgttgttatctttcctttactctctctttatcttgtttattccttgcttttgattgtggttttgctatgca 213712  T
Q  114 cttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctccacac 203  Q
    ||| | ||  |||| ||  |||| |||||| ||||||||||||||||  |||||||||||||||| |||  |||||||||||||| ||||    
T  213713 cttag-ttaatagactaggtctatattgttgttattgcttgtggttt-tttacatttggttattgattgctattgatacttgctctacac 213800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 316897 - 317014
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggc 102  Q
    |||||||||||||||||||||||||| ||| |||| ||||| |||||||| |||||||  |||||||||||| |||||||| |||||||| ||||||||     
T  316897 agagtaggtcattgttggaccgaacttggtaaacaattctttgtgttgttctcttttccctactctctttattttgtttattctttggttcaattgtggt 316996  T
Q  103 tttgctatgcacttggtt 120  Q
    |||||| | |||||||||    
T  316997 tttgctttacacttggtt 317014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 16640976 - 16640818
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctc--tttatcttgtttatcctttggttgaattg 98  Q
    |||||||||||||  || || ||||||||||| |||||||||||||||||||||||||||||| |||||  ||||||||| |||| |||| ||| |||||    
T  16640976 ccagagtaggtcaa-gtagggccgaactgggtaaacatttcttggtgttgttatcttttctttgctctctatttatcttgcttattctttagttaaattg 16640878  T
Q  99 tggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtt 159  Q
    ||| |||| |||||| || | ||||||||||| ||||||||| || || ||||||||||||    
T  16640877 tggttttgttatgca-tttgatttctagattaaatctagatttttgttgttgcttgtggtt 16640818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 88 - 251
Target Start/End: Original strand, 40763200 - 40763356
Alignment:
Q  88 tggttgaattgtggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcatt 187  Q
    ||||| |||| ||| |||||||||||||||||||  |||||||  |||| |||||| ||||||||| ||||||||    ||||| |||||||||||||||    
T  40763200 tggttaaattatggttttgctatgcacttggttta-tagattaggtctatattgttgttattgcttatggtttac----atttgattattggttgtcatt 40763294  T
Q  188 gatacttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    |||||||||||||||  ||  ||| ||| ||||||||||| |||| ||||||||||||||||||    
T  40763295 gatacttgctccacagatc--atagtttatattggtgtgagatttaagtccggaattcacaaca 40763356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 4160731 - 4160850
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtg 100  Q
    ||||||||||||||||||||||| |||||||| || |||| || ||||||||||||||||| |  |||| ||||||||||||| ||||||||  ||| ||    
T  4160731 ccagagtaggtcattgttggaccaaactgggtaaatatttattagtgttgttatcttttctatgttctcattatcttgtttattctttggttcgattatg 4160830  T
Q  101 gctttgctatgcacttggtt 120  Q
    | |||||| | |||||||||    
T  4160831 gttttgctttacacttggtt 4160850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 28278592 - 28278652
Alignment:
Q  176 ttggttgtcattgatacttgctccacacctcatataatttgtattggtgtgaaatttgagtcc 238  Q
    ||||||| |||||||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  28278592 ttggttgccattgatacttgctccacacatcatat--tttgtattggtgtgaaatttgagtcc 28278652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 30793269 - 30793362
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgt 99  Q
    |||||| ||||||||||||||||||  ||| |||||||||||||||  || |   |||| ||||||||||||||||||||| |||||||| ||||||    
T  30793269 agagtaagtcattgttggaccgaacaaggtaaacatttcttggtgtgtttgt---ttctctactctctttatcttgtttattctttggtttaattgt 30793362  T

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Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 38747281 - 38747353
Alignment:
Q  176 ttggttgtcattgatacttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaaca 251  Q
    ||||||| |||||||||||||||||||| ||  ||| ||||||||||||||||||||||||||  |||||||||||    
T  38747281 ttggttgccattgatacttgctccacacatc--atagtttgtattggtgtgaaatttgagtcc-aaattcacaaca 38747353  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 35616302 - 35616381
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctctttatcttgtttatc 84  Q
    ||||||||||||||||||||||| ||||  | |||||| |||||||| || | |||||| ||||||| || |||||||||||    
T  35616302 agagtaggtcattgttggaccgagctgg--ggacattttttggtgtttttctattttctctactctccttgtcttgtttatc 35616381  T

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Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 40147531 - 40147613
Alignment:
Q  169 ttggttattggttgtcattgatacttgctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaacacaa 254  Q
    |||||| ||||||  |||| ||||||||||||||| ||  ||| |||||||||||||||  ||||||||| |||||||||||||||    
T  40147531 ttggttgttggtttccattaatacttgctccacacatc--atagtttgtattggtgtgagttttgagtcc-gaattcacaacacaa 40147613  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16452212 - 16452258
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgt 48  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||    
T  16452212 ccagagtaggtcaa-gttggaccgaactgggtaaacatttcttggtgt 16452258  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28278448 - 28278494
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgt 48  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||    
T  28278448 ccagagtaggtcaa-gttggaccgaactgggtgaacaattcttggtgt 28278494  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 10700682 - 10700580
Alignment:
Q  5 agtaggtcattgttggaccgaactgggtgaacatttcttg-gtgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtggct 103  Q
    ||||||||||||||  ||||||||| || || | |||||  |||||||| |||||||| ||| |||||||||||| |||| ||||| ||  ||||||| |    
T  10700682 agtaggtcattgtttcaccgaactgagtaaataattctttcgtgttgttctcttttctctacgctctttatcttgcttattctttgatttgattgtggtt 10700583  T
Q  104 ttg 106  Q
    |||    
T  10700582 ttg 10700580  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 13488517 - 13488571
Alignment:
Q  196 ctccacacctcatataatttgtattggtgtgaaatttgagtccggaattcacaacaca 253  Q
    |||||||| ||||||  ||||||||||||||| |||||||||| ||||||||||||||    
T  13488517 ctccacacatcatat--tttgtattggtgtgagatttgagtcc-gaattcacaacaca 13488571  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13343192 - 13343228
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaaca 37  Q
    ||||||||||||||  |||||||||||||||||||||    
T  13343192 ccagagtaggtcatgtttggaccgaactgggtgaaca 13343228  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 42927037 - 42927069
Alignment:
Q  16 gttggaccgaactgggtgaacatttcttggtgt 48  Q
    ||||||||||||||||| |||||||||||||||    
T  42927037 gttggaccgaactgggtaaacatttcttggtgt 42927069  T

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Target: scaffold0236 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 10621 - 10820
Alignment:
Q  1 ccagagtaggtcattgttggaccgaactgggtgaacatttcttggtgttgttatcttttctttactctc-tttatcttgtttatcctttggttgaattgt 99  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||| ||||| ||  |||||    
T  10621 ccagagtaggtcaa-gttggaccgaactgggtaaacatttcttggtgttgttatctttcctctactctcttttatcttgtttattctttgattagattgt 10719  T
Q  100 ggctttgctatgcacttggttttctagattatatctagattgtttttattgcttgtggtttacttacatttggttattggttgtcattgatacttgctcc 199  Q
     | ||| |||| ||||| | ||||||||||| |||||||||||| || |||||||||| ||| || | ||||||||| ||||||||||||||||| ||||    
T  10720 agttttactatacactt-gatttctagattaaatctagattgttgttgttgcttgtgg-ttattttcttttggttatcggttgtcattgatactttctcc 10817  T

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Target: scaffold0197 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 1431 - 1291
Alignment:
Q  3 agagtaggtcattgttggaccgaactgggtgaacatttcttgg-tgttgttatcttttctttactctctttatcttgtttatcctttggttgaattgtgg 101  Q
    ||||||||||||||||||||| || ||||| |||| ||||| | |||| || |||| ||||||||||||||||||| |||||  |||||||  |||||||    
T  1431 agagtaggtcattgttggaccaaattgggtaaacaattctttgatgtttttctcttctctttactctctttatcttatttattttttggtttgattgtgg 1332  T
Q  102 ctttgctatgcacttggttttctagattatatctagattgtt 143  Q
     ||| || | ||||||| ||||||||||| ||||||||||||    
T  1331 ttttactttacacttgg-tttctagattagatctagattgtt 1291  T

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Target: scaffold0927 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 3482 - 3431
Alignment:
Q  148 ttgcttgtggtttacttacatttggttattggttgtcattgatacttgctcca 200  Q
    |||||||||||| | |||||||| ||||||||||| |||||||||||||||||    
T  3482 ttgcttgtggtt-atttacatttagttattggttgccattgatacttgctcca 3431  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 490299 - 490219
Alignment:
Q  56 ttttctttactctctttatcttgtttatcctttggttgaattgtggctttgctatgcacttggttttctagattatatctagat 139  Q
    ||||||||||||||||||||||| ||||  |||||||   |||||| |||||||| ||||||| || |||||||| ||||||||    
T  490299 ttttctttactctctttatcttgattat--tttggtttgtttgtggttttgctatacacttgg-ttgctagattagatctagat 490219  T

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