View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_83 (Length: 333)
Name: NF17763_low_83
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_83 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 7979060 - 7979362
Alignment:
| Q |
16 |
acattaactataacacatcccaatcaaaa-tatttaataacttgagaattatcattgattgaaagtattttgaaaaatataaatgttttatacctgaagg |
114 |
Q |
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| T |
7979060 |
acattaactataacacatcccaatcaaaaatatttaataacttgagaattatcattgattgaaaatattttgaaaaatataaaagttttatacctgaagg |
7979159 |
T |
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| Q |
115 |
acatgactgctgctgccaaggacacaccagaaattgagttgaaatcagggagatgagataacacaaagtgaactgaagcaaatatcatgatgaaataggt |
214 |
Q |
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| T |
7979160 |
acatgactgctgctgccaaggacacaccagaaattgagttgaaatcagggagatgagataacacaaagtgaactgaagcaaatatcatgatgaaataggt |
7979259 |
T |
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| Q |
215 |
caactttatctttttgcagcttggacacacaatatcatggaacttttgcaatgatgttcccccagtgaccatataaacaatgttaacaccaatttctacc |
314 |
Q |
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| T |
7979260 |
caactttatctttttgcagcttggacacacaatatcatggaacttttgcaatgatgttcccccagtgaccatataaacaatgttaacaccaatttctacc |
7979359 |
T |
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| Q |
315 |
aca |
317 |
Q |
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||| |
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| T |
7979360 |
aca |
7979362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 297
Target Start/End: Complemental strand, 8032219 - 8032035
Alignment:
| Q |
113 |
ggacatgactgctgctgccaaggacacaccagaaattgagttgaaatcagggagatgagataacacaaagtgaactgaagcaaatatcatgatgaaatag |
212 |
Q |
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| T |
8032219 |
ggacatgactgctgcaaccaaggatacaccggaaatggagttcaagtttggtagatgacacaatacaaattgagcagaggcaaagatcataatgaaatag |
8032120 |
T |
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| Q |
213 |
gtcaactttatctttttgcagcttggacacacaatatcatggaacttttgcaatgatgttcccccagtgaccatataaacaatgt |
297 |
Q |
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| T |
8032119 |
gtcaatttgatatttttgcaacttgaacacactgtattgtggaacttccgcaatgatgcacctccggtgaccatgtagacaatgt |
8032035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 313
Target Start/End: Original strand, 3113 - 3313
Alignment:
| Q |
113 |
ggacatgactgctgctgccaaggacacaccagaaattgagttgaaatcagggagatgagataacacaaagtgaactgaagcaaatatcatgatgaaatag |
212 |
Q |
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| T |
3113 |
ggacatgactgctgccaccaaagatacaccagaaatggagttcaagtttggtagatgacacaatacaaattgagcagaggcaaagatcataatgaaatat |
3212 |
T |
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| Q |
213 |
gtcaactttatctttttgcagcttggacacacaatatcatggaacttttgcaatgatgttcccccagtgaccatataaacaatgttaacaccaatttcta |
312 |
Q |
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| T |
3213 |
gtcaatttgatatttttgcaacttggacacactgtattgtggaactttcgcagtgatgcacctccggtgaccatgtaaacaatgttcaccccaacttcta |
3312 |
T |
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| Q |
313 |
c |
313 |
Q |
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| T |
3313 |
c |
3313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 105 - 301
Target Start/End: Original strand, 14198547 - 14198743
Alignment:
| Q |
105 |
tacctgaaggacatgactgctgctgccaaggacacaccagaaattgagttgaaatcagggagatgagataacacaaagtgaactgaagcaaatatcatga |
204 |
Q |
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||||| || |||||||| || || || || || ||||||||||| ||||| || | |||||| ||||| || ||||||||||| || ||||| ||||| | |
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| T |
14198547 |
taccttaacgacatgacagcggcggctaaagagacaccagaaatagagttcaagttagggaggtgagacaagacaaagtgaacagaggcaaaaatcatta |
14198646 |
T |
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| Q |
205 |
tgaaataggtcaactttatctttttgcagcttggacacacaatatcatggaacttttgcaatgatgttcccccagtgaccatataaacaatgttaac |
301 |
Q |
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| T |
14198647 |
taaaataagtcaatttgatttttttgcaatcggaacacacggtatcatgaaacttctgcaaagattttcctccggttaccatgtagacaatgttaac |
14198743 |
T |
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