View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_low_86 (Length: 322)
Name: NF17763_low_86
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_86 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 8107122 - 8107419
Alignment:
| Q |
1 |
tagtactgttgttttgatgatgatctttctggcatctgcttacgctgttgatgaagatgagtctccaacaataacaatctctgaatttgaatcatatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8107122 |
tagtactgttgttttgatgatgatctttctggcatctgcttattctgttgttga---tgagtctccaacaataacactctctgaatttgaatcatatcca |
8107218 |
T |
|
| Q |
101 |
actctttcagaagcatccgttgataaattgtttcatgattggatgttggagcataatcggacatattcaagcagcaacgagatgaagaaacgtagagaaa |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8107219 |
acactttcagaagcatccgttgataaattgtttcatgattggatgttggagcataatcggacatattcaagcagcaacgagatgaagaaacgtcgagaac |
8107318 |
T |
|
| Q |
201 |
tatttaagaaggaattggaacatgttaaggagtttaacaaaggt-attttttaatccatccagtttgttttagattcaattcaataatcgatcagattat |
299 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||| || |||||||||||||||||| ||||||| |
|
|
| T |
8107319 |
tattcaagaagaaattggaacatgttaaggagtttaacaaaggtaatttttttatctatctagtttgtttaagtttcaattcaataatcgatgagattat |
8107418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 8111767 - 8112064
Alignment:
| Q |
1 |
tagtactgttgttttgatgatgatctttctggcatctgcttacgctgttgatgaagatgagtctccaacaataacaatctctgaatttgaatcatatcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8111767 |
tagtactgttgttttgatgatgatctttctggcatctgcttattctgttgttga---tgagtctccaacaataacactctctgaatttgaatcatatcca |
8111863 |
T |
|
| Q |
101 |
actctttcagaagcatccgttgataaattgtttcatgattggatgttggagcataatcggacatattcaagcagcaacgagatgaagaaacgtagagaaa |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8111864 |
acactttcagaagcatccgttgataaattgtttcatgattggatgttggagcataatcggacatattcaagcagcaacgagatgaagaaacgtcgagaac |
8111963 |
T |
|
| Q |
201 |
tatttaagaaggaattggaacatgttaaggagtttaacaaaggt-attttttaatccatccagtttgttttagattcaattcaataatcgatcagattat |
299 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||| || |||||||||||||||||| ||||||| |
|
|
| T |
8111964 |
tattcaagaagaaattggaacatgttaaggagtttaacaaaggtaatttttttatctatctagtttgtttaagtttcaattcaataatcgatgagattat |
8112063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 1386968 - 1387036
Alignment:
| Q |
153 |
ataatcggacatattcaagcagcaacgagatgaagaaacgtagagaaatatttaagaaggaattggaac |
221 |
Q |
| |
|
||||||| ||||| ||||||| || ||||||||||| ||| | ||||||||| |||| ||| ||||||| |
|
|
| T |
1386968 |
ataatcgaacatactcaagcatcaccgagatgaagagacgcaaagaaatattcaagatggagttggaac |
1387036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 30879248 - 30879172
Alignment:
| Q |
163 |
atattcaagcagcaacgagatgaagaaacgtagagaaatatttaagaaggaattggaacatgttaaggagtttaaca |
239 |
Q |
| |
|
|||||||||||| ||| |||||||||| ||||||||||| | |||||| ||||||||||| || || ||||||||| |
|
|
| T |
30879248 |
atattcaagcagtgacgggatgaagaaatgtagagaaatactcaagaagaaattggaacatcttgagaagtttaaca |
30879172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University