View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_87 (Length: 318)

Name: NF17763_low_87
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_87
NF17763_low_87
[»] chr2 (17 HSPs)
chr2 (1-305)||(9329121-9329425)
chr2 (1-231)||(9316550-9316774)
chr2 (4-295)||(9283504-9283795)
chr2 (2-297)||(9275044-9275344)
chr2 (2-176)||(9357703-9357880)
chr2 (4-219)||(9321501-9321722)
chr2 (2-196)||(10353644-10353838)
chr2 (2-181)||(9292451-9292630)
chr2 (9-171)||(10348312-10348474)
chr2 (41-160)||(7115101-7115220)
chr2 (14-83)||(8573031-8573100)
chr2 (9-85)||(10372391-10372467)
chr2 (4-79)||(9060665-9060740)
chr2 (185-261)||(10348509-10348585)
chr2 (31-82)||(11987017-11987068)
chr2 (30-163)||(10336386-10336519)
chr2 (31-79)||(12005657-12005705)
[»] chr3 (1 HSPs)
chr3 (29-172)||(37463048-37463191)
[»] chr4 (1 HSPs)
chr4 (2-155)||(26575396-26575549)
[»] scaffold0667 (1 HSPs)
scaffold0667 (20-176)||(5018-5177)
[»] chr8 (1 HSPs)
chr8 (29-78)||(41966254-41966303)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 9329121 - 9329425
Alignment:
1 aagaatgttagggatagcaagaggtaggaaagggataatacgatatttacgggtgttagggttccagattgtgatttcgttggggccgttagggtcccta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9329121 aagaatgttagggatagcaagaggtaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggggccgttagggtcccta 9329220  T
101 aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgcgtgacaggagcaatgttggtgctgaaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
9329221 aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagacccatgttgctgttacgcgtgacaggagcaatgttggtgctgaaag 9329320  T
201 gatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9329321 gatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaattatt 9329420  T
301 tttga 305  Q
    |||||    
9329421 tttga 9329425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 9316550 - 9316774
Alignment:
1 aagaatgttagggatagcaagaggtaggaaagggataatacgatatttacgggtgttagggttccagattgtgatttcgttggggccgttagggtcccta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| | | |     
9316550 aagaatgttagggatagcaagaggaaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcatg 9316649  T
101 aaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgcgtgacaggagcaatgttggtgctgaaag 200  Q
    ||||||||||| |||| ||| || || |  |||||||| |||||||||| |||||||||  ||||||||  ||||||||||||       ||| ||||||    
9316650 aaagcgatttgaccattggaaatggcgagaaggccgttacatgaaccgagaagagccattatgctgttatacgtgacaggagc------tgtgttgaaag 9316743  T
201 gatggttgagtggaatcatggatttggttag 231  Q
    ||||||||||||||||||||||||| |||||    
9316744 gatggttgagtggaatcatggatttcgttag 9316774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 4 - 295
Target Start/End: Complemental strand, 9283795 - 9283504
Alignment:
4 aatgttagggatagcaagaggtaggaaagggataatacgatatttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaaaa 103  Q
    |||||||||||||| |||||| || ||||||||||| | || |||||||||||||| ||||||||||||||||||  | | | |||| || | | |||||    
9283795 aatgttagggataggaagagggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttcagttgcgtcgtttggatgcgtaaaa 9283696  T
104 gcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgcgtgacaggagcaatgttggtgctgaaaggat 203  Q
    || ||| |||||| | |||| || | ||||||||| |||||||| ||||||||| || |||||||| |||||| |||| | ||||||||| |||||||||    
9283695 gcaattgggccattgtagatggcgaggaggccgttacatgaaccaataagagccttgatgctgttaagcgtgaaaggatcgatgttggtggtgaaaggat 9283596  T
204 ggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctgaaggatgaggttgaaattgagggaa 295  Q
    ||||||| || || |||||||||||||| ||||| | ||||||||||||||||| ||| ||| |  | |||||||| ||||| |||||||||    
9283595 ggttgagcggtattatggatttggttaggttagggaaatcgagttggtagagattggtcttgtgacggaggatgagtttgaagttgagggaa 9283504  T

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Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 297
Target Start/End: Original strand, 9275044 - 9275344
Alignment:
2 agaatgttagggatagcaagaggtaggaaagggataatacgatatttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaa 101  Q
    ||||||||||| |||| |||||| || ||||||||||| |||| ||||| ||||||||||||||||||||| ||||| || |   ||| ||| | ||| |    
9275044 agaatgttaggtataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcatttgcatcgtcaggatgcctga 9275143  T
102 aagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgcgtgacaggagcaatg----ttggtgctga 197  Q
    | ||| ||||||||| ||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| || | || ||    ||| | ||||    
9275144 aggcggtttggccattggagatagcaatgaggccgttacatgaacctataagagccatggtgctgttacgcgtgaaagaatcattgttgcttgctactga 9275243  T
198 aaggatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagag-atcggtattgagctgaaggatgaggttgaaattgagggaat 296  Q
    |||||||||||||| | || ||| |||||||||| ||||| | || ||||| ||||||  | ||| ||| | ||||| ||||||||||||||||||||||    
9275244 aaggatggttgagttgtattatgaatttggttaggttagggaaattgagttcgtagagtttgggtgttgtgttgaagaatgaggttgaaattgagggaat 9275343  T
297 t 297  Q
    |    
9275344 t 9275344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 176
Target Start/End: Original strand, 9357703 - 9357880
Alignment:
2 agaatgttagggatagcaagaggtaggaaagggataatacgatatttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaa 101  Q
    |||||||||||||||| |||||| ||||||||||||||  ||| ||||||| ||||| |||||||||||| ||||||||||| | ||||||| | ||| |    
9357703 agaatgttagggataggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgttggcggcgttaggatgcctga 9357802  T
102 aagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgt---tgctgttacgcgtga 176  Q
    ||||||||| ||||| |||||| || | ||||||||| ||||||||||||||||  ||||   |||||||||||||||    
9357803 aagcgatttcgccattggagatggcgaggaggccgttacatgaaccgataagagaaatgttggtgctgttacgcgtga 9357880  T

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Target: chr2; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 9321501 - 9321722
Alignment:
4 aatgttagggatagcaagaggtaggaaagggataatacgatatttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaaaa 103  Q
    ||||| |||||||| |||||||||||||||||| |||||||  ||||| ||| |||||||||||||||||||||||||||||  |||||| |   | |||    
9321501 aatgtcagggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaa 9321600  T
104 gcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctg------ttacgcgtgacaggagcaatgttggtgctga 197  Q
    || | |||||| | |||||| || | ||||||||| || |||||||||||||||||| | |||      ||||| ||||||||||  || |||||| |||    
9321601 gccagttggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatggttctggttctattacgtgtgacaggagtgattttggtggtga 9321700  T
198 aaggatggttgagtggaatcat 219  Q
    ||||||||||||||||||||||    
9321701 aaggatggttgagtggaatcat 9321722  T

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Target: chr2; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 10353644 - 10353838
Alignment:
2 agaatgttagggatagcaagaggtaggaaagggataatacgatatttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaa 101  Q
    |||||||||||||||| |||||| || ||||||||||| ||||  ||||||||||| |||||||| |||||||||||||||||| ||||||| | | | |    
10353644 agaatgttagggataggaagagggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggggcgttaggatgcgtga 10353743  T
102 aagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgcgtgacaggagcaatgttggtgctg 196  Q
    |||| |||  ||| | ||| || || | ||||||||| ||||||||||||||||  ||| || |||||| | ||| |||| | ||||||||||||    
10353744 aagctattacgccgtgggacatggcgaggaggccgttacatgaaccgataagagtaatggtgttgttacccttgaaaggatcgatgttggtgctg 10353838  T

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Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 9292451 - 9292630
Alignment:
2 agaatgttagggatagcaagaggtaggaaagggataatacgatatttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaa 101  Q
    ||||||||||||||||||||||| || ||||||||||| |||| |||| | |||||||||||| ||| |||||||||||| ||| ||| ||| | | | |    
9292451 agaatgttagggatagcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtga 9292550  T
102 aagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacgcgtgacagga 181  Q
    |   |||||||| || ||| || || | ||||||||| |||||||| ||||||| ||||  |||| ||||||||| ||||    
9292551 agcagatttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatgaagctggtacgcgtgatagga 9292630  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 10348312 - 10348474
Alignment:
9 tagggatagcaagaggtaggaaagggataatacgatatttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaaaagcgat 108  Q
    |||| |||| |||||| || |||||||||||  ||| ||||||||||||||||||||||||||||||||||||| ||  |||||| | | | ||| ||||    
10348312 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgat 10348411  T
109 ttggccataggagatagcaatgaggccgttgcatgaaccgataagagccatgttgctgttacg 171  Q
    |   ||   |||||| || | ||||||||| |||||||||||||||| ||| || ||||||||    
10348412 tacccctgtggagatggcgaggaggccgttacatgaaccgataagagacattttactgttacg 10348474  T

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Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 7115220 - 7115101
Alignment:
41 cgatatttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaaaagcgatttggccataggagatagcaatgaggccgttgc 140  Q
    |||| |||||||||||||| ||||||||||||||||||  | | |   ||||| | | |||||||||||||||||| |||||| || | ||||||||| |    
7115220 cgatgtttacgggtgttagtgttccagattgtgatttcagttgcgtgattaggatacgtaaaagcgatttggccattggagatggcgaggaggccgttac 7115121  T
141 atgaaccgataagagccatg 160  Q
    |||||||||||||| |||||    
7115120 atgaaccgataagatccatg 7115101  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 8573100 - 8573031
Alignment:
14 atagcaagaggtaggaaagggataatacgatatttacgggtgttagggttccagattgtgatttcgttgg 83  Q
    |||| |||||| || |||||||||||  ||| |||||||||||||||||||||||||| ||||| |||||    
8573100 ataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttgg 8573031  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 10372391 - 10372467
Alignment:
9 tagggatagcaagaggtaggaaagggataatacgatatttacgggtgttagggttccagattgtgatttcgttgggg 85  Q
    |||| |||| |||||| || ||||||||||  | || ||||||||||||||||||||||| ||||||||| ||||||    
10372391 taggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattgggg 10372467  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 9060740 - 9060665
Alignment:
4 aatgttagggatagcaagaggtaggaaagggataatacgatatttacgggtgttagggttccagattgtgatttcg 79  Q
    |||||||||||||| |||||| |  ||||||||  | |||| ||| |||||||||||||||||||||||| |||||    
9060740 aatgttagggataggaagagggataaaagggatggtccgatctttgcgggtgttagggttccagattgtggtttcg 9060665  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 10348509 - 10348585
Alignment:
185 atgttggtgctgaaaggatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggt 261  Q
    ||||||||  |||| |||| |||||||||||| || ||||||||||| ||||| | || ||||||||||| ||||||    
10348509 atgttggtagtgaagggatagttgagtggaatgatagatttggttaggttagggaaatggagttggtagaaatcggt 10348585  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 11987068 - 11987017
Alignment:
31 agggataatacgatatttacgggtgttagggttccagattgtgatttcgttg 82  Q
    ||||||||| |||| |||||||||||||||||||||||  | ||||||||||    
11987068 agggataatccgatgtttacgggtgttagggttccagaaagcgatttcgttg 11987017  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 10336386 - 10336519
Alignment:
30 aagggataatacgatatttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaaaagcgatttggccataggagatagcaat 129  Q
    |||||||||| |||| ||||||| || |||| || |||| || |||||| |||| |  || |||||   | |||||||||| ||||| |||||| || |     
10336386 aagggataatccgatgtttacggatggtaggattacagaatgcgatttcattggcggagtaagggttagtgaaagcgatttcgccattggagatggcgag 10336485  T
130 gaggccgttgcatgaaccgataagagccatgttg 163  Q
    |||||| ||||||||||| | |||||| ||||||    
10336486 gaggccattgcatgaaccaagaagagcgatgttg 10336519  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 12005705 - 12005657
Alignment:
31 agggataatacgatatttacgggtgttagggttccagattgtgatttcg 79  Q
    ||||||||| |||| ||||||| |||||||||||||||  |||||||||    
12005705 agggataatccgatgtttacggatgttagggttccagaaagtgatttcg 12005657  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 37463048 - 37463191
Alignment:
29 aaagggataatacgatatttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaaaagcgatttggccataggagatagcaa 128  Q
    |||||||||||  ||| |||||| ||||||||||||||||||||||||||||||| | ||||||| | | | |||||||||||||||| ||||||||| |    
37463048 aaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggagatagcga 37463147  T
129 tgaggccgttgcatgaaccgataagagccatgttgctgttacgc 172  Q
     ||||||||| ||||||||||||||||||||| |||||| ||||    
37463148 ggaggccgttacatgaaccgataagagccatggtgctgtcacgc 37463191  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 155
Target Start/End: Original strand, 26575396 - 26575549
Alignment:
2 agaatgttagggatagcaagaggtaggaaagggataatacgatatttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaa 101  Q
    |||||||||||||| | |||||| || ||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||| |||| || | | | |    
26575396 agaatgttagggatgggaagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggggcgttgggatgcgtga 26575495  T
102 aagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagag 155  Q
    |||| |||  ||| | ||| || || | ||||||||| ||||||||||||||||    
26575496 aagccattacgccgtgggacatggcgaggaggccgttacatgaaccgataagag 26575549  T

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Target: scaffold0667 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 5018 - 5177
Alignment:
20 agaggtaggaaagggataatacgatatttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaaaagcgatttggccatagg 119  Q
    ||||| || |||||||||||  ||| ||||||| |||||||||||||||||||||||||||||| | ||||||| |  || | |||||||| ||| | ||    
5018 agagggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttggcggcgttaggatgtctgagagcgatttcgccgttgg 5117  T
120 agatagcaatgaggccgttgcatgaaccgataagagccatgt---tgctgttacgcgtga 176  Q
    | |  || | ||||||||| ||||||||||||||||| ||||   |||||||||||||||    
5118 aaacggcgaggaggccgttacatgaaccgataagagcaatgttggtgctgttacgcgtga 5177  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 41966303 - 41966254
Alignment:
29 aaagggataatacgatatttacgggtgttagggttccagattgtgatttc 78  Q
    ||||||||||| |||| ||||| | ||||||||||||||| |||||||||    
41966303 aaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 41966254  T

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