View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_89 (Length: 315)
Name: NF17763_low_89
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_89 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 45549241 - 45548968
Alignment:
| Q |
20 |
ttagaccaaacacagcggcatgcaatggtatttaacttagagatgtaagtatagtcaaattaaaatagaataaatggaataatacaagacaatttactct |
119 |
Q |
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| T |
45549241 |
ttagaccaaacatagcggcatgcaatggtatttaacttagagatgtaagtatagtcaaattaaaatagaataaatggaataatacaagacaatttactct |
45549142 |
T |
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| Q |
120 |
tccattttttggtataagaagataaaatgtgaaatttactcttgctaagatccccggaccctaacaatatatttacacagataataatttcatgtatgtt |
219 |
Q |
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| T |
45549141 |
tccattttttggtataaga---taaaatgtgaaatttactcttgctaagatccccggaccctaacaatttatttacacagataataatttcatgtatgtt |
45549045 |
T |
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| Q |
220 |
ggtttacaggaggtggtgtaataaaagaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgag |
296 |
Q |
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| T |
45549044 |
ggtttacaggaagtggtgaagtaaaagaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgag |
45548968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 45545171 - 45545090
Alignment:
| Q |
217 |
gttggtttacaggaggtggtgtaataaaagaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgagtc |
298 |
Q |
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| T |
45545171 |
gttggcttacaggaagtgatgaaataaaagacataacaccactcgaggaatctcttgagagaatgaatgtgcatgacgagtc |
45545090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 298
Target Start/End: Complemental strand, 45550358 - 45550261
Alignment:
| Q |
201 |
taataatttcatgtatgttggtttacaggaggtggtgtaataaaagaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgagtc |
298 |
Q |
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| T |
45550358 |
taatactttcatgtgtgttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatgatgagtc |
45550261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 45549926 - 45549887
Alignment:
| Q |
256 |
cacttgaggaatctctagagagaatgaatgtgcatgatga |
295 |
Q |
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| T |
45549926 |
cacttgaggaatctcttgagagaatgaatgtgcatgatga |
45549887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 45544230 - 45544193
Alignment:
| Q |
258 |
cttgaggaatctctagagagaatgaatgtgcatgatga |
295 |
Q |
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| T |
45544230 |
cttgaggaatctcttgagagaatgaatgtgcatgatga |
45544193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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