View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17763_low_9 (Length: 625)
Name: NF17763_low_9
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 31857722 - 31857343
Alignment:
| Q |
19 |
atatactctttaaatgccattactccttttatcttagaactaatt----cttatat--atctgttattcttttaaacttatggatgtatgaagttttaat |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||| ||| || |||| || ||||||| || | | |||| ||||| ||| || ||||| |
|
|
| T |
31857722 |
atataccctttaaatgccattactccttttatcttgaaactgattaactctgatatgtatttgttatttgttgatatttattgatgtttga-gtgttaat |
31857624 |
T |
|
| Q |
113 |
gaaaaggtaatgaaggataggttatttatatatactataaaatactcttcaaattgtaagaaaatgacaagtaaa-tgcaggttacctactctttggaat |
211 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||| ||| ||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
31857623 |
gaaaagttaatgaaggctatgttatttatatataccatagaatactcttgaaattctaagaaaatgataagtaaaatgcaggttacctactctttggaat |
31857524 |
T |
|
| Q |
212 |
tatatgaccctcttgttgtacatacatatataaataaaa-cctttttctttgnnnnnnngtgtttattgtcaacaatttaattaaattaaaatgtgataa |
310 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31857523 |
tatatgaccctcttgttgtacata--tatataaataaaaacctttttccttgaaaggaagtgcttattgtcaacaatttaattaaattaaaatgtgataa |
31857426 |
T |
|
| Q |
311 |
taaacggttgcactttgaccccgcaacaataccgccacatcttgtatccttctctaacttcatgtcatcaatttctccttcat |
393 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
31857425 |
taaacggttgcactttgaccccacaacaataccgccacatcttgtatccttcactaacttcaattcatcaatttctccttcat |
31857343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 432 - 617
Target Start/End: Complemental strand, 31856936 - 31856750
Alignment:
| Q |
432 |
tatatgcttcaattcgtcaatgactaaatggagtcatttcaaaatttggtttgtaattacagcttcattctagcctaacctaccaaactatcaaacttgg |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31856936 |
tatatgcttcaattcgtcaatgactaaatgtagtcatttcaaaatttggtttataatcacagcttcattctagcctaacctaccaaactatcaaacttgg |
31856837 |
T |
|
| Q |
532 |
gcaagtaacaaaacaagactatatcaatagaattgttgagtagtcaaggtagttgaactcct-atatgcatattcaaatctacctat |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31856836 |
gcaagtaacaaaacaagactatatcaatagaattgttgagtagtcaaggtagttgaactcctaatatgcatattcaaatctacctat |
31856750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University