View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_90 (Length: 313)
Name: NF17763_low_90
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_90 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 2 - 313
Target Start/End: Complemental strand, 39090867 - 39090556
Alignment:
| Q |
2 |
atatcaccatgttgatgcaagttagctacactcgtttctgcataagctcttataaagcctagccaacaatagtaagtgctttttgcagcatcttacacgc |
101 |
Q |
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| T |
39090867 |
atatcaccatgttgatgcaagttagctacacccgtttctgcataagctcttataaagcctagccaacaatagtaagtgctttttgcagcatcttacacgc |
39090768 |
T |
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| Q |
102 |
cgatttaaaagagaaccctgaggaagaatcatgtatgcatgcccaattgtctgtcattccggcctgcacatctgtccttgcaatgacagattctaattca |
201 |
Q |
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| T |
39090767 |
cgatttaaaagagaaccctgaggaagaatcatgtatgcatgcccaattgtctgtcattccggcctgcacatctgtccttgcaatgacagattctaattca |
39090668 |
T |
|
| Q |
202 |
agcagctgatccttctcatacgaacaacgttcacctccagttccagcgccaaatctacatgtcgcctacacgctccttagtttcggacactgttgcttgc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39090667 |
agcagctgatccttctcatacgaacaacgttcacctccagttccagcgccaaatctacatgtcgcctacacgctccttagtttcggacactgttgcttgc |
39090568 |
T |
|
| Q |
302 |
ttattctcctta |
313 |
Q |
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|||||||||||| |
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| T |
39090567 |
ttattctcctta |
39090556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 81 - 313
Target Start/End: Complemental strand, 39081430 - 39081191
Alignment:
| Q |
81 |
tttttgcagcatcttacacgccgatttaaaagagaaccctgaggaagaatcatgtatg-------catgcccaattgtctgtcat-tccggcctgcacat |
172 |
Q |
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||||||||||| |||| ||| |||||||| ||||||||||| | ||||||||||||| | | |||||||||| ||| ||| ||||||| | |
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| T |
39081430 |
tttttgcagcagcttatacgtcgatttaacagagaaccctgcagcagaatcatgtatgatgtatcccttcccaattgtc---catatcctgcctgcataa |
39081334 |
T |
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| Q |
173 |
ctgtccttgcaatgacagattctaattcaagcagctgatccttctc--atacgaacaacgttcacctccagttccagcgccaaatctacatgtcgcctac |
270 |
Q |
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| |||| ||||||||||||||||||||||||||||||||||||||| | |||||||| | |||||||||||||||| |||||||| |||||| |||||| |
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| T |
39081333 |
ccgtccctgcaatgacagattctaattcaagcagctgatccttctcccaaacgaacaatgatcacctccagttccagtgccaaatccacatgttgcctac |
39081234 |
T |
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| Q |
271 |
acgctccttagtttcggacactgttgcttgcttattctcctta |
313 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||| |
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| T |
39081233 |
gcgctgcctagtttcggacactgttgcttgcttattctcctta |
39081191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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