View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_91 (Length: 309)

Name: NF17763_low_91
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_91
NF17763_low_91
[»] chr3 (2 HSPs)
chr3 (1-292)||(21076141-21076434)
chr3 (3-262)||(21021891-21022152)
[»] scaffold0025 (2 HSPs)
scaffold0025 (153-261)||(50403-50511)
scaffold0025 (5-95)||(50544-50634)
[»] chr6 (2 HSPs)
chr6 (5-130)||(5474039-5474166)
chr6 (5-113)||(13167611-13167721)
[»] chr4 (1 HSPs)
chr4 (5-129)||(22310620-22310746)
[»] chr8 (1 HSPs)
chr8 (5-127)||(8777096-8777220)
[»] chr1 (2 HSPs)
chr1 (5-130)||(1345559-1345686)
chr1 (128-262)||(28385407-28385540)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 21076141 - 21076434
Alignment:
Q  1 cgggtttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttcttgaatctttatgt- 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||     
T  21076141 cgggtttaatgacgatatttcttgcttggtttggactcgaaagggtcggtaaagctgatgctttagttgcaggggctattggttcttgaatctttatgtg 21076240  T
Q  100 -ttacagtcgattcatacaccattatcgggtttcattataatcaggtgtgtctctggttactttggttcatcaatgattgtggctttttacacatctctt 198  Q
     ||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21076241 tttatagtcgattcatacaccattctcgggtttcattataatcaggcgtgtctctggttactttggttcatcaatgatcgtggctttttacacatctctt 21076340  T
Q  199 tattttgcaatcttggtttcgggtcccacgttgggcttgctgggttgtgttgatgtgtaatttttctaaattttcgtctggttagctactatat 292  Q
    |||||||||||| | |||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||    
T  21076341 tattttgcaatcctagttttgggtcccacgctgggcttgctgggttgtgttgatgtgtaatttttctagattttcgtctagttagctattatat 21076434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 3 - 262
Target Start/End: Original strand, 21021891 - 21022152
Alignment:
Q  3 ggtttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttcttgaatctttatgttta 102  Q
    |||||||| || |||||||| |||||| ||||||||  ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |     
T  21021891 ggtttaataacaatatttctcgcttgggttggactccgaagggtcggtaaagctgatgcttttgttgcaggggctattggttcttaaatctttatgtgtc 21021990  T
Q  103 --cagtcgattcatacaccattatcgggtttcattataatcaggtgtgtctctggttactttggttcatcaatgattgtggctttttacacatctcttta 200  Q
      ||||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||    
T  21021991 ggcagtcgaatcatacaccattctcaggttttattataatcaggtgtgtctctggttactttggttcttcaatgattgcggctttttgcacatctcttta 21022090  T
Q  201 ttttgcaatcttggtttcgggtcccacgttgggcttgctgggttgtgttgatgtgtaatttt 262  Q
    |||||||||| ||||||| |||||   |||||||||||||||||||||||||||||||||||    
T  21022091 ttttgcaatcctggtttcaggtcctgggttgggcttgctgggttgtgttgatgtgtaatttt 21022152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 50511 - 50403
Alignment:
Q  153 tggttactttggttcatcaatgattgtggctttttacacatctctttattttgcaatcttggtttcgggtcccacgttgggcttgctgggttgtgttgat 252  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  50511 tggttactttggttgatcaatggttgcggctttttacacatctctttattttgcaatctcggttttgggtcccacgttgggcttgctgagttgtgttgat 50412  T
Q  253 gtgtaattt 261  Q
    |||||||||    
T  50411 gtgtaattt 50403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 50634 - 50544
Alignment:
Q  5 tttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttcttgaatcttt 95  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||||  | ||||||||||| ||||||||| ||||||||| |||||    
T  50634 tttaatgaagatatttttggcttggtttggactcgaaagggtcagtaaagttgttgcttttgttgtaggggctataggttcttgattcttt 50544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 5474039 - 5474166
Alignment:
Q  5 tttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttcttgaatcttt--atgttta 102  Q
    |||||||| ||||||||||||||||||| |||||||||||||| ||||||| | ||||||||||||||||||| ||||||||||||||| |   |||| |    
T  5474039 tttaatgaagatatttcttgcttggtttagactcgaaagggtcggtaaagctgttgcttttgttgcaggggcttttggttcttgaatctctcggtgttaa 5474138  T
Q  103 cagtcgattcatacaccattatcgggtt 130  Q
    ||||| |||||||||||||| |||||||    
T  5474139 cagtcaattcatacaccattctcgggtt 5474166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 13167721 - 13167611
Alignment:
Q  5 tttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttcttgaa--tctttatgttta 102  Q
    |||||||| ||||||||||||||||||||||||| ||||| || ||||||| | ||||||||||||| ||||| || |||||||||  ||| | |||| |    
T  13167721 tttaatgatgatatttcttgcttggtttggactcaaaaggatcggtaaagctgctgcttttgttgcaagggcttttcgttcttgaatttctctgtgttga 13167622  T
Q  103 cagtcgattca 113  Q
    |||||||||||    
T  13167621 cagtcgattca 13167611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 22310746 - 22310620
Alignment:
Q  5 tttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttcttgaa--tctttatgttta 102  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||| ||| | |||||| |||||||||| | ||||||||||||  ||| | |||| |    
T  22310746 tttaatgaagatatttcttgcttggtttggactcgaaagcgtcagtatagctgctgctttcgttgcaggggattttggttcttgaatctctctgtgttga 22310647  T
Q  103 cagtcgattcatacaccattatcgggt 129  Q
    |||||||||||||||||||| ||||||    
T  22310646 cagtcgattcatacaccattctcgggt 22310620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 8777220 - 8777096
Alignment:
Q  5 tttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttcttgaa--tctttatgttta 102  Q
    |||| ||| |||||||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||||| ||||||||||||  ||| | |||| |    
T  8777220 tttactgaagatatttcttgcttggtttggactcgaaagggtcggtatagctgatgctttcgttgcaggggcttttggttcttgaatctctctgtgttga 8777121  T
Q  103 cagtcgattcatacaccattatcgg 127  Q
    ||||||||||||| |||||| ||||    
T  8777120 cagtcgattcatagaccattctcgg 8777096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 1345686 - 1345559
Alignment:
Q  5 tttaatgacgatatttcttgcttggtttggactcgaaagggtcagtaaagcggatgcttttgttgcaggggctattggttcttgaat--ctttatgttta 102  Q
    |||||||| |||||||||||||||||||||| |||||||| || ||||| | | ||||||||| |  | |||| |||||||||||||  |||| |||| |    
T  1345686 tttaatgaagatatttcttgcttggtttggagtcgaaaggatcggtaaaactgctgcttttgtggtcgaggcttttggttcttgaatcactttgtgttga 1345587  T
Q  103 cagtcgattcatacaccattatcgggtt 130  Q
    |||||||||||||||||||| |||||||    
T  1345586 cagtcgattcatacaccattctcgggtt 1345559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 128 - 262
Target Start/End: Complemental strand, 28385540 - 28385407
Alignment:
Q  128 gtttcattataatcaggtgtgtctctggttactttggttcatcaatgattgtggctttttacacatctctttattttgcaatcttggtttcgggtcccac 227  Q
    ||||||||||||||| |||||| |||  ||||||||| || ||||||||||   ||||||||||| |  |||| ||||||||| |||||| | ||| | |    
T  28385540 gtttcattataatcaagtgtgtatctaattactttggatcgtcaatgattgcaactttttacacaccattttactttgcaatc-tggttttgagtctcgc 28385442  T
Q  228 gttgggcttgctgggttgtgttgatgtgtaatttt 262  Q
    |||||   |||||||||||||||||||||||||||    
T  28385441 gttggatctgctgggttgtgttgatgtgtaatttt 28385407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University