View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_92 (Length: 309)
Name: NF17763_low_92
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_92 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 2 - 299
Target Start/End: Complemental strand, 7821947 - 7821665
Alignment:
| Q |
2 |
taataagaagtttcatatttgagaaacaatgcataaagtagctcattccttgtatcaggtacaccaggaagacaccagtggcttcaatcttggcgatttg |
101 |
Q |
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| T |
7821947 |
taataagaagtttcatatttgagaaacaatgcataaagtagctcattccatgtatcaggtacaccaggaagacaccagtggcttcaatcttggcgatttg |
7821848 |
T |
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| Q |
102 |
tagttgcattaggacccaaataatatttagatagatgtccatcttttctc-----tgttacattcaataccttaaaaaccttggaagtgtttttatgtgc |
196 |
Q |
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| T |
7821847 |
aagttgcattaggacccaaataatatttacatagatgtccatcttttctctgacttgtcatctttgttacattcaataccttggaagtgtttttgtgtgc |
7821748 |
T |
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| Q |
197 |
taatattgcggaattggcaattttgaactgtaaccaactatccttaggtactgatgcggacccctgttctggcattgtttccaaatgtcattttccacct |
296 |
Q |
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| T |
7821747 |
taatattgcagaattggcaattttgaactgtaa--------------------atgcggacccctgttctggcattgtttccaaatgacattttccacct |
7821668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 7812411 - 7812265
Alignment:
| Q |
7 |
agaagtttcatatttgagaaacaatgcataaagtagctcattccttgtatcaggtacaccaggaagacaccagtggcttcaatcttggcgatttgtagtt |
106 |
Q |
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| T |
7812411 |
agaagtttcatatttgagaaacaatgcataaagtagctcattccatgtatcaggtacaccgggaagacaccaatggctacaatcttgacgatgtggattt |
7812312 |
T |
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| Q |
107 |
gcattaggacccaaataatatttagatagatgtccatcttttctctg |
153 |
Q |
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| T |
7812311 |
tcattagggcccaaataatatttagatgaatgtccatcttttctctg |
7812265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 7812218 - 7812100
Alignment:
| Q |
180 |
gaagtgtttttatgtgctaatattgcggaattggcaattttgaactgtaaccaactatccttaggtactgatgcggacccctgttctggcattgtttcca |
279 |
Q |
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||||||||| | ||| ||||||||| ||||||||||||||||||||| |||| |||| |||||||| || |||||| | ||||| | |||||||| |
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| T |
7812218 |
gaagtgtttgtgtgttttaatattgcagaattggcaattttgaactgtgaccagttatctttaggtaccattgaggacccaagctctggtagtgtttcca |
7812119 |
T |
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| Q |
280 |
aatgtcattttccaccttt |
298 |
Q |
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|||| || |||||| |||| |
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| T |
7812118 |
aatgacagtttccatcttt |
7812100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 52614699 - 52614647
Alignment:
| Q |
32 |
gcataaagtagctcattccttgtatcaggtacaccaggaagacaccagtggct |
84 |
Q |
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| T |
52614699 |
gcataaattagctcattccatgcatcagggaccccaggaagacaccaatggct |
52614647 |
T |
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