View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17763_low_93 (Length: 307)
Name: NF17763_low_93
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17763_low_93 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 133 - 294
Target Start/End: Original strand, 39758149 - 39758310
Alignment:
| Q |
133 |
aagttcattttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttcctta |
232 |
Q |
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| T |
39758149 |
aagttcattttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttcctta |
39758248 |
T |
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| Q |
233 |
tccattaatttctccttcaactcctcaatttcggatttctttctatccaattcggattccct |
294 |
Q |
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| T |
39758249 |
tccatcaatttctccttcaactcctcaattttggatttctttctatccaattcggattccct |
39758310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 48 - 294
Target Start/End: Original strand, 39763800 - 39764046
Alignment:
| Q |
48 |
atatgctttgcaatgtggtctccttatccatcaattcacccttcaataccgcaacatatttgtctaaccttttaagctccttgttaagttcattttcttt |
147 |
Q |
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| T |
39763800 |
atatgttttgcagtgttgtctccttatccatcatttcacccttcaatgccactacatattcgtctaaccttttaagttccttcttaaattctagttcttt |
39763899 |
T |
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| Q |
148 |
tttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttccttatccattaatttctcc |
247 |
Q |
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| T |
39763900 |
tttcgatgacagtgacacacttttttcaagcttcaaattcaacctctcattctcattcacaataccttgcaactcattttccttatccatcagtttctct |
39763999 |
T |
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| Q |
248 |
ttcaactcctcaatttcggatttctttctatccaattcggattccct |
294 |
Q |
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| T |
39764000 |
ttcaactcctcaatttcggctttctttctttccaattcggactccct |
39764046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 39754775 - 39754895
Alignment:
| Q |
18 |
catatcagcatgtgtgaatgtgaacctgttatatgctttgcaatgtggtctccttatccatcaattcacccttcaataccgcaacatatttgtctaacct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
39754775 |
catatcagcatgtgtgaatgtgaacctgttatatgctttgcaatgtggtctccttatccatcaattcacccttcaataccgccacatatttgtccaacct |
39754874 |
T |
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| Q |
118 |
tttaagctccttgttaagttc |
138 |
Q |
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| T |
39754875 |
tttaagctccttgttaagttc |
39754895 |
T |
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