View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_94 (Length: 307)

Name: NF17763_low_94
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_94
NF17763_low_94
[»] chr1 (1 HSPs)
chr1 (1-297)||(7228607-7228900)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 7228607 - 7228900
Alignment:
Q  1 taacatatatattcctttcttttgcagtaggattgaaaggaataggactataccctagaccgtaccgagctatatatgataaagatgataaagaagcacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7228607 taacatatatattcctttcttttgcagtaggattgaaaggaataggactataccctagaccgtaccgagctatatatgataaagatgataaagaagcacc 7228706  T
Q  101 caaattgaatttgagttgatttatggcacttctatgctatgtactatcacatgcacatggatgtgtatatcatcatcatcatgtactcaaactgaaattt 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||    
T  7228707 caaattgaatttgagttgatttatggcacttttatgctatgtactatcacatgcacatggatgtgtat---atcatcatcatgtacacaaactgaaattt 7228803  T
Q  201 ggtcgttatacgtctaacatgtaacgacctacttatctgttaaagcaaacgcacttcataaagaagaaagcctgaaccagaataatatatcgtggtc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7228804 ggtcgttatacgtctaacatgtaacgacctacttatctgttaaagcaaacgcacttcataaagaagaaagcctgaaccagaataatatatcgtggtc 7228900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University