View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17763_low_96 (Length: 302)

Name: NF17763_low_96
Description: NF17763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17763_low_96
NF17763_low_96
[»] chr2 (18 HSPs)
chr2 (18-290)||(10348019-10348291)
chr2 (28-291)||(9321214-9321477)
chr2 (18-283)||(9060772-9061037)
chr2 (18-277)||(8573142-8573401)
chr2 (18-283)||(9283827-9284092)
chr2 (138-285)||(10353469-10353616)
chr2 (72-283)||(9292213-9292421)
chr2 (118-288)||(10372198-10372368)
chr2 (18-288)||(9328824-9329097)
chr2 (127-283)||(7115276-7115432)
chr2 (219-283)||(9357612-9357676)
chr2 (29-284)||(10336080-10336338)
chr2 (18-278)||(9274743-9275000)
chr2 (28-103)||(9065409-9065484)
chr2 (18-103)||(16269314-16269399)
chr2 (72-283)||(9316310-9316521)
chr2 (41-103)||(12005935-12005997)
chr2 (139-187)||(17565808-17565856)
[»] scaffold0667 (1 HSPs)
scaffold0667 (18-296)||(4711-4989)
[»] chr4 (1 HSPs)
chr4 (138-285)||(26575221-26575368)
[»] chr3 (1 HSPs)
chr3 (138-285)||(37462846-37462993)
[»] chr8 (2 HSPs)
chr8 (18-103)||(41966540-41966625)
chr8 (218-281)||(41966362-41966425)
[»] chr1 (5 HSPs)
chr1 (18-281)||(29467429-29467691)
chr1 (220-278)||(29452955-29453013)
chr1 (51-103)||(29423529-29423581)
chr1 (220-277)||(29442970-29443027)
chr1 (53-102)||(29453131-29453180)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 10348019 - 10348291
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348019 gttaaacgcgacaattaaagaaggatgtaacccatcaagtttcttcgtcataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 10348118  T
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagagagacta 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  || ||    
T  10348119 tgaagatcgtacggcatagcaggaattatcttccatgagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttctgtagatcgagta 10348218  T
Q  218 accaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggagca 290  Q
    |   ||| | |||||||| ||||||||| |||| ||   ||||||||||||||||||||||||||||||||||    
T  10348219 agtgagaaattctgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcataaggagca 10348291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 28 - 291
Target Start/End: Original strand, 9321214 - 9321477
Alignment:
Q  28 acaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca--aatcgt--ataaatgttgaaga 123  Q
    |||||||||||||||||||| ||| |||||||||| || || |||||||||| |||||||||||||||||||||||  ||| |   ||| ||    ||||    
T  9321214 acaattaaagaaggatgtaatccaccaagtttctttgtcattatccagtgaagagaattctcaacaaaaacccccatgaattgagcatagat----aaga 9321309  T
Q  124 tcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagagagactaaccaag 223  Q
      ||||||||||   |||||||| ||||| ||||||||| |  ||||||||||||| || |||| ||||||||||| ||| ||| ||||| |||||||||    
T  9321310 gagtacggcatactgggaattattttccacgagtttgttatagagctgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaag 9321409  T
Q  224 agagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggagcag 291  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||||    
T  9321410 agattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcataagcagcag 9321477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 9061037 - 9060772
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    |||||| | |||||||||  |||||| | |||||||||||||||| |  |||| |||||||| |||||||| ||||||||||||||   | |  | || |    
T  9061037 gttaaatgcgacaattaaccaaggatatgacccatcaagtttcttggccataacccagtgaagagaattctgaacaaaaacccccatggcttgaacatat 9060938  T
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagagagacta 217  Q
    |||||| |||||||||||   |||||| | ||||| ||||||||||||||||| ||||| || || |||| ||||||||||  ||||||| |||  | ||    
T  9060937 tgaagagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaaatgttttgtcgagcaaata 9060838  T
Q  218 accaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 283  Q
    |||||| || |||||||| |||||||||| |||| || ||||||||||||||||||||||||||||    
T  9060837 accaagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcata 9060772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 8573401 - 8573142
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    |||||| | |||||||||  |||||| | |||||||||||||||| |  |||| |||||||| |||||||| ||||||||||||||   | |  | || |    
T  8573401 gttaaatgcgacaattaaccaaggatatgacccatcaagtttcttggccataacccagtgaagagaattctgaacaaaaacccccatggcttgaacatat 8573302  T
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagagagacta 217  Q
    |||||| |||| ||| ||   |||||| | ||||| ||||||||||||||||| |||||| | || |||| ||||||||||||||| ||| ||| |||||    
T  8573301 tgaagagcgtatggcgtactgggaattgttttccacgagtttgttttcaagctaaagagtgtgacatgtgaatcataaaaagggttatgttgagtgacta 8573202  T
Q  218 accaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 277  Q
    ||||||||| || ||||| |||||||||| |||||||  |||||||||||||||||||||    
T  8573201 accaagagattcggaggagtttgtaatcggcggttaatagatcaaaaccgaagccgtgaa 8573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 9284092 - 9283827
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    |||||||| |||||||||| || | | | |||||||||| |||||    || ||||||||||||||||||||||||||||||||||   | |    ||      
T  9284092 gttaaacgcgacaattaaacaaaggtctgacccatcaagattcttttccattatccagtgaatagaattctcaacaaaaacccccatggcttgagcatag 9283993  T
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagagagacta 217  Q
    | || |  ||| ||||||  ||||||||| ||||| |||||||||||  |||||||||||||  | |||| || |||||||| |||||||||||| ||||    
T  9283992 taaacagtgtagggcataataggaattattttccacgagtttgttttggagctgaagagtctggcatgtgaatgataaaaagagttttgtagagatacta 9283893  T
Q  218 accaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 283  Q
     |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  9283892 gccaagagattcggaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaatgcata 9283827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 138 - 285
Target Start/End: Original strand, 10353469 - 10353616
Alignment:
Q  138 aggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagagagactaaccaagagagtctgaggatt 237  Q
    ||||||||  ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||  ||  ||   ||||| |||||||| |    
T  10353469 aggaattactttccatgagtttgttttcaagctgaagagtctgacatgtggatcataaaaagggttttgtagatcgagcaagttagagattctgaggagt 10353568  T
Q  238 ttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataag 285  Q
    ||||||||||||| || || ||||||||||||||| ||||||||||||    
T  10353569 ttgtaatcgccggatacagaatcaaaaccgaagccatgaacgcataag 10353616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 72 - 283
Target Start/End: Original strand, 9292213 - 9292421
Alignment:
Q  72 ccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgttgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctg 171  Q
    |||||| |||||||||| |||||||||||||| | | |  | || ||||||| |||||||||||  |||||| || ||||| ||||| |||||  |||||    
T  9292213 ccagtggatagaattctgaacaaaaacccccatagcttgaacatattgaagagcgtacggcatactaggaatgattttccacgagttagttttggagctg 9292312  T
Q  172 aagagtctcacttgtggatcataaaaagggttttgtagagagactaaccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagc 271  Q
    ||||||||||| |||||||||   |||| ||  |||||   | ||| |||||||| |||||||| |||||||||||||||||| |||||| |||||||||    
T  9292313 aagagtctcacctgtggatca---aaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagc 9292409  T
Q  272 cgtgaacgcata 283  Q
    ||||||||||||    
T  9292410 cgtgaacgcata 9292421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 118 - 288
Target Start/End: Original strand, 10372198 - 10372368
Alignment:
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagagagacta 217  Q
    |||||| |||||||||||| ||||||||||||||| ||||| | |||  ||||||||||||  || |||||||||||||||| | ||||  |   || ||    
T  10372198 tgaagaacgtacggcatagtaggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtggtcgatta 10372297  T
Q  218 accaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggag 288  Q
    |  |||||| |||||||| ||||| |||||||| ||||| ||||||||||||||| |||||||||||||||    
T  10372298 agtaagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgcataaggag 10372368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 9328824 - 9329097
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    ||||||||  |||||||||||||||||||| ||| ||||||||||||| || |||||||||| |||||||||||| |||||||||   |  |    ||      
T  9328824 gttaaacgcaacaattaaagaaggatgtaatccaccaagtttcttagtcattatccagtgaagagaattctcaaccaaaacccccgtgttttgagcatag 9328923  T
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttt----tgtagagag 213  Q
      |||| |||| ||||||||||||||||| ||||| |||||||||||  || |||||||||| || |||||| || ||| ||| | |    | | ||  |    
T  9328924 acaagagcgtagggcatagcaggaattattttccaagagtttgttttagagttgaagagtctgacatgtggaaca-aaagaggatctttcatttggatcg 9329022  T
Q  214 actaaccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggag 288  Q
     ||| ||||| || |||||||| ||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
T  9329023 gctatccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggag 9329097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 283
Target Start/End: Complemental strand, 7115432 - 7115276
Alignment:
Q  127 tacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagagagactaaccaagaga 226  Q
    ||||||||  ||||||| || ||||| |||||||||||||| ||||||||||| |  |||| ||||||||||| |||| || ||  |  |||||||||||    
T  7115432 tacggcattacaggaatcattttccacgagtttgttttcaaactgaagagtctgatctgtgaatcataaaaagagtttggtggattgcataaccaagaga 7115333  T
Q  227 gtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 283  Q
     |||||| | |||||||||  | |||||||||||||||||||||||||||| |||||    
T  7115332 ttctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaaagcata 7115276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 9357612 - 9357676
Alignment:
Q  219 ccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 283  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9357612 ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 9357676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 284
Target Start/End: Original strand, 10336080 - 10336338
Alignment:
Q  29 caattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgttg--aagatcg 126  Q
    |||||||| |||| ||||||||||||||||||  ||| || |||||||||| |||||||||||||||||| ||||  | ||   | | | |  ||||       
T  10336080 caattaaacaaggttgtaacccatcaagtttcggagtcattatccagtgaagagaattctcaacaaaaacaccca--tggttagagtatagtaaagaata 10336177  T
Q  127 tacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaag---ggttttgtagagagactaaccaag 223  Q
    ||||||||| | |||| | | ||||| |||||||||||| ||||||||||| |||  |||| || || |||||   ||| |||||||  ||| |||||||    
T  10336178 tacggcatatccggaagtgttttccaagagtttgttttcgagctgaagagtgtcaaatgtgaattatcaaaagtatggtgttgtagatcgacgaaccaag 10336277  T
Q  224 agagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataa 284  Q
    ||| |||||||| |||||||||| ||| ||| | |||||||||||| ||||||||||||||    
T  10336278 agattctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaacgcataa 10336338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 9274743 - 9275000
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    ||||||||  ||||||||| |||| ||| || |||||| || | |||| || | |||||||| ||||||||||||||||| |||||   | |  | || |    
T  9274743 gttaaacgcaacaattaaacaagggtgtgactcatcaatttccctagtcattacccagtgaagagaattctcaacaaaaatccccatggcttgaacatat 9274842  T
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagagagacta 217  Q
    | |||| |||||||||||   |||||||| ||||| ||||||||||||||||||||||||||||| ||||  ||   ||||| ||  |||| |    |||    
T  9274843 ttaagagcgtacggcatactgggaattattttccacgagtttgttttcaagctgaagagtctcacatgtgattc---aaaagagtaatgtatatcagcta 9274939  T
Q  218 accaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaac 278  Q
    |||| |||| |||||| | ||| |||||||||| ||||||||||||||| || ||||||||    
T  9274940 accatgagattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaac 9275000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 9065484 - 9065409
Alignment:
Q  28 acaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||||||||||||||||| ||| |||||||| || || ||| ||||||||||||||||||||||||||||||    
T  9065484 acaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaaccccca 9065409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 16269314 - 16269399
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||| ||| |||||||||||||||||||| ||||||||||| |  || || ||| |||||||||||||||||||||||||||    
T  16269314 gttaaacgcgacgattaaagaaggatgtaacccgtcaagtttcttcgccattatacagcgaatagaattctcaacaaaaaccccca 16269399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 283
Target Start/End: Original strand, 9316310 - 9316521
Alignment:
Q  72 ccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgttgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctg 171  Q
    |||||||| |||||||| ||||||||||||||   | |  | || ||||||| |||||||||||   |||||| | ||||| |||||||||||||||||     
T  9316310 ccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtacggcatactgggaattgttttccacgagtttgttttcaagcta 9316409  T
Q  172 aagagtctcacttgtggatcataaaaagggttttgtagagagactaaccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagc 271  Q
    ||||| || || |||| ||||||||||| |   ||   |  | | | |||||| | |||||||| ||||||||| || ||| | ||||||||||||||||    
T  9316410 aagagactgacatgtgaatcataaaaagagcaatgaccatcggccatccaagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagc 9316509  T
Q  272 cgtgaacgcata 283  Q
    ||||||||||||    
T  9316510 cgtgaacgcata 9316521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 12005997 - 12005935
Alignment:
Q  41 gatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||||||||| |||||||    || |||||||||| |||||||||||||||||||||||    
T  12005997 gatgtaacccatcaggtttcttgaccatcatccagtgaagagaattctcaacaaaaaccccca 12005935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 17565856 - 17565808
Alignment:
Q  139 ggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtg 187  Q
    |||| ||| ||||| ||||| ||||||||| ||||||||||||||||||    
T  17565856 ggaagtattttccacgagttcgttttcaagttgaagagtctcacttgtg 17565808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 4711 - 4989
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    |||||| | |||||||| ||||||||||||||||||||||||||| |  || |||||||||||||||| |||||| ||||||||||  | || | |        
T  4711 gttaaaagcgacaattagagaaggatgtaacccatcaagtttctttgccattatccagtgaatagaatcctcaaccaaaaccccca--tggtttgagcaa 4808  T
Q  118 tga--agatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagagagac 215  Q
     ||  ||  |||||||||||| ||||||||| ||||| ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||    
T  4809 agacaagggcgtacggcatagtaggaattattttccacgagttggttttcaagctaaagagtctaacatgtggatcataaaaagggttttgtagagagac 4908  T
Q  216 taaccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggagcagttcat 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4909 taaccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggagcagttcat 4989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 138 - 285
Target Start/End: Original strand, 26575221 - 26575368
Alignment:
Q  138 aggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagagagactaaccaagagagtctgaggatt 237  Q
    ||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||  ||  ||  |||||| |||||||| |    
T  26575221 aggaattattttccatgagtttgttttcaagctgaagagtctaacatgtggatcataaaaagggttttgtagatcgagcaagtaagagattctgaggagt 26575320  T
Q  238 ttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataag 285  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  26575321 ttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcataag 26575368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 138 - 285
Target Start/End: Original strand, 37462846 - 37462993
Alignment:
Q  138 aggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagagagactaaccaagagagtctgaggatt 237  Q
    ||||| ||| ||||| |||||||||||  |||||||||||||||| |||||||||||||||||||||||||||  ||  | |||||||| |||||||| |    
T  37462846 aggaactattttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcgagaagccaagagattctgaggagt 37462945  T
Q  238 ttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataag 285  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37462946 ttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataag 37462993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 41966625 - 41966540
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||| |||||||||| |||| ||||| |||||||||| ||| || || |||||||||| |||||| | ||||||||||||||    
T  41966625 gttaaacgcgacaattaaacaagggtgtaatccatcaagttccttggtcattatccagtgaagagaattgtgaacaaaaaccccca 41966540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 41966425 - 41966362
Alignment:
Q  218 accaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca 281  Q
    ||||||||| |||||||| ||||| ||||| |||||| |||||||||||||| |||||||||||    
T  41966425 accaagagattctgaggagtttgtgatcgctggttaatggatcaaaaccgaatccgtgaacgca 41966362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 29467691 - 29467429
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataa--at 115  Q
    |||||||| || ||||||| |||  ||||||||||||||||||||  | || ||||| |||| ||||||||||||||||||| ||  || || | |  ||    
T  29467691 gttaaacgcgataattaaacaagattgtaacccatcaagtttcttcttcattatccaatgaagagaattctcaacaaaaaccacc--atggtttgaggat 29467594  T
Q  116 gttgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagagagac 215  Q
      | ||||  ||||||||||  || || ||  ||||||||||| |||||| ||||||||||| | || |||| ||||| |    |||  |||||   |||    
T  29467593 agtaaagagagtacggcatactagaaagtactttccaggagttcgttttcgagctgaagagtgtaacatgtgaatcatgagtgtggtggtgtagtttgac 29467494  T
Q  216 taaccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca 281  Q
     || ||||||| ||||| || |||||||||  ||||||| ||||||||||||||||||||||||||    
T  29467493 gaaacaagagattctga-gagtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgca 29467429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 29453013 - 29452955
Alignment:
Q  220 caagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaac 278  Q
    ||||||| |||||||| |||||||||| || |||| ||||||||||| |||||||||||    
T  29453013 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 29452955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 29423529 - 29423581
Alignment:
Q  51 atcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||||||  || || |||||||||| |||||||||||||||||||||||    
T  29423529 atcaagtttctccgtcattatccagtgaagagaattctcaacaaaaaccccca 29423581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 29443027 - 29442970
Alignment:
Q  220 caagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 277  Q
    ||||||| ||||| || ||||||||||  ||| || ||||||||||||||||||||||    
T  29443027 caagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaa 29442970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 29453180 - 29453131
Alignment:
Q  53 caagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccc 102  Q
    ||||||||  ||| || |||||||||| ||||||||||||||||||||||    
T  29453180 caagtttccgagtcattatccagtgaagagaattctcaacaaaaaccccc 29453131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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