View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17764_high_3 (Length: 553)
Name: NF17764_high_3
Description: NF17764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17764_high_3 |
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| [»] chr6 (7 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 15 - 553
Target Start/End: Original strand, 5280183 - 5280721
Alignment:
| Q |
15 |
taatactctggcttctgaaacataggttttggggaaggtaaagtttcagcttgattgtaaatttttgatcttaatgcctaaaggtggaaatcatacatgg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| |
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| T |
5280183 |
taatactctggcttctgaaacataggttttggggaaggtaaagcttcagcttgattgtaaatttgtgatcttaatgcttaaaggtggaaatcatccatgg |
5280282 |
T |
|
| Q |
115 |
ttgtaggtaagccattcaatttgctgacaaattgggaaatctaaatttgcttcaagagtttatctattagacaatgtcaaagacatatgccttctaatct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5280283 |
ttgtaggtaagccattcaatttgctgacaaattgggaaatctaaatttgcttcaagagtttatctattagacaatgtcaaagacatatgccttctaatct |
5280382 |
T |
|
| Q |
215 |
accaaagaggtttctagttttctgtttaatgtaataattggttttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattcc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5280383 |
accaaagaggtttctagttttctgtttaatgtaataattggttttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattcc |
5280482 |
T |
|
| Q |
315 |
attgttttgtaaaatgtgtttgtgggttacattattgtaaaatcatggatgaaaaagttttgagcattcattagcagtgcacataaaaaggcatgacaaa |
414 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5280483 |
attgttttgtaaaatgtgtttgtggtttacattattgtaaaatcatggatgaaaaagttttgagcattcattagcagtgcacataaaaaggcatgacaaa |
5280582 |
T |
|
| Q |
415 |
atctgttttgcagaagttactaatatatctatctcaaggaaatattaatagctcttttgaataaagtacactagtaagtagatgcgacaatgataaaata |
514 |
Q |
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| T |
5280583 |
atctgttttgcagaagttactaacatatctatctcaaggaaatattaatagctcttttgaataaagtatactagtaagtagatgcgacaatgataaaaga |
5280682 |
T |
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| Q |
515 |
aatggatcggatcaaaggtcgatggagttcagaataaga |
553 |
Q |
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||||||| |||||||||||||||||||||||||| |||| |
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| T |
5280683 |
aatggattggatcaaaggtcgatggagttcagaagaaga |
5280721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 15 - 553
Target Start/End: Original strand, 5178369 - 5178907
Alignment:
| Q |
15 |
taatactctggcttctgaaacataggttttggggaaggtaaagtttcagcttgattgtaaatttttgatcttaatgcctaaaggtggaaatcatacatgg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||| |
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| T |
5178369 |
taatactctggcttctgaaacataggttttggggaaggtaaagcttcagcttgattgtaaatttgtgatcttaatgcttaa-ggtggaaatcatccatgg |
5178467 |
T |
|
| Q |
115 |
ttgtaggtaagccattcaatttgctgacaaattgggaaatctaaatttgcttcaagagtttatctattagacaatgtcaaagacatatgccttctaatct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5178468 |
ttgtaggtaagccattcaatttgctgacaaattgggaaatctaaatttgcttcaagagtttatctattagacaatgtcaaagacatatgccttctaatct |
5178567 |
T |
|
| Q |
215 |
accaaagaggtttctagttttctgtttaatgtaataattggttttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattcc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5178568 |
accaaagaggtttctagttttctgtttaatgtaataattagttttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattcc |
5178667 |
T |
|
| Q |
315 |
attgttttgtaaaatgtgtttgtgggttacattattgtaaaatcatggatgaaaaagttttgagcattcattagcagtgcacataaaaaggcatgacaaa |
414 |
Q |
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| T |
5178668 |
attgttttgtaaaatgtgtttgtgggttacattattgtaaaatcatggatgaaaaagttttgagcattcattagcagtgcacataaaaaggcatgacaaa |
5178767 |
T |
|
| Q |
415 |
atctgttttgcagaagttactaatatatctatctcaaggaaa-tattaatagctcttttgaataaagtacactagtaagtagatgcgacaatgataaaat |
513 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5178768 |
atctgttttgcagaagttactaacatatctatctcaaggaaattattaatagctcttttgaataaagtatactagtaagtagatgcgacaatgataaaag |
5178867 |
T |
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| Q |
514 |
aaatggatcggatcaaaggtcgatggagttcagaataaga |
553 |
Q |
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| T |
5178868 |
aaatggatcggatcaaaggtcgatggagttcagaagaaga |
5178907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 221 - 415
Target Start/End: Complemental strand, 5688427 - 5688231
Alignment:
| Q |
221 |
gaggtttctagttttctgtttaatgtaataattggttttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgtt |
320 |
Q |
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||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5688427 |
gaggtttctagttttctgtataatctaataattggtcttgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgtt |
5688328 |
T |
|
| Q |
321 |
ttgtaaa--atgtgtttgtgggttacattattgtaaaatcatggatgaaaaagttttgagcattcattagcagtgcacataaaaaggcatgacaaaa |
415 |
Q |
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||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| ||| ||||||||||||||| ||||||||| |
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| T |
5688327 |
ttgtaaaatatgtgtttatgggttacattattgtaaaataatggatgaaaaagttttgagcactcatcagctgtgcacataaaaaggaatgacaaaa |
5688231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 259 - 409
Target Start/End: Complemental strand, 5125955 - 5125803
Alignment:
| Q |
259 |
tgttacttaatgtgtgcctttggtgcatttttctgctgttaggctttacaaattccattgttttgtaaaatgtgt--ttgtgggttacattattgtaaaa |
356 |
Q |
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|||||| || |||||||||||||| |||||| | ||||| |||| |||||||||||||||| ||| || ||| |||| |||||||| ||||||||| |
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| T |
5125955 |
tgttacctattgtgtgcctttggtttatttttattttgttatgcttaacaaattccattgtttcataacatatgtatttgttggttacatcattgtaaaa |
5125856 |
T |
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| Q |
357 |
tcatggatgaaaaagttttgagcattcattagcagtgcacataaaaaggcatg |
409 |
Q |
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||||||||||||||||||||| || |||||| |||||| |||||||||||||| |
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| T |
5125855 |
tcatggatgaaaaagttttgaacactcattaccagtgcccataaaaaggcatg |
5125803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 5688506 - 5688449
Alignment:
| Q |
15 |
taatactctggcttctgaaacat-aggttttggggaaggtaaagtttcagcttgattg |
71 |
Q |
| |
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|||| |||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
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| T |
5688506 |
taattctctggcttctgaaacatgagattttggggaaggtaaagattcagcttgattg |
5688449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 5072453 - 5072410
Alignment:
| Q |
273 |
tgcctttggtgcatttttctgctgttaggctttacaaattccat |
316 |
Q |
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| T |
5072453 |
tgcctttggttcatttttcttctgttaggctttacaaattccat |
5072410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 514
Target Start/End: Complemental strand, 5125690 - 5125605
Alignment:
| Q |
424 |
gcagaagttactaatatatctatctcaaggaaatattaatagctcttttgaataaagtacactagtaagtagatgcgacaatgataaaata |
514 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| ||| |||| | || ||||||| ||| |||||||| ||||||||||||||| |
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| T |
5125690 |
gcagaagttactaacatatctatctcaaggaaatatgaattgctc-ctagagtaaagtagact----agtagatgtgacaatgataaaata |
5125605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 22054069 - 22054143
Alignment:
| Q |
333 |
tttgtgggttacattattgtaaaatcatggatgaaaaagttttgagcattcattagcagtgcacataaaaaggcatg |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
22054069 |
tttgtgggttacattattgtaaaatcatggatgataaagttttgaacattcattagcagt--acatataaaggcatg |
22054143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 553
Target Start/End: Complemental strand, 5924321 - 5924277
Alignment:
| Q |
509 |
aaaataaatggatcggatcaaaggtcgatggagttcagaataaga |
553 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||| ||||| |||| |
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| T |
5924321 |
aaaagaaatggatcggatcaaaggtccatggagtccagaagaaga |
5924277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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