View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17764_high_5 (Length: 386)
Name: NF17764_high_5
Description: NF17764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17764_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 44 - 370
Target Start/End: Original strand, 48857714 - 48858038
Alignment:
| Q |
44 |
aaattgagcacaacgtaatatgtttcgtgcagcaatgcattgatgttacgcatcaactatatacg--ggaatacatatttattaccgtcgcttnnnnnnn |
141 |
Q |
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| T |
48857714 |
aaattgagcacaacgtaatatgtttcgtgcagcaatgcattgatgttacgcatgaactatatacgttggaatacatatttattactgtcgcttaaaaaga |
48857813 |
T |
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| Q |
142 |
nnnnnnnnnnacggagttgttcaagttaaacctcgtcatttcaaattaaaccnnnnnnnnnnnnnnnnnggcgaaatcgttcaagttaaatctcgtaata |
241 |
Q |
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| T |
48857814 |
atatttttttatggagttgttcaagttaaacctcgtcatttcaaattaaaccttttttttttttt----ggcgaaatcgttcaagttaaatctcgtaata |
48857909 |
T |
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| Q |
242 |
ttcttctagtattttattatgttgcgggcttcgttcgatctcatataataaaaaacatgttagtatatttgttggtttaagaacataagcataaattaac |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48857910 |
ttcttctagtattttattatgttgcgggcttcgttcgatctcatataataaaaaacatgttagtatatttgttggtttaagaacataagcataaatgaac |
48858009 |
T |
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| Q |
342 |
tattgttacaatgttttatactctaatta |
370 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
48858010 |
tattgttacaatgttttatactctaatta |
48858038 |
T |
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