View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17764_high_6 (Length: 345)
Name: NF17764_high_6
Description: NF17764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17764_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 45668373 - 45668044
Alignment:
| Q |
1 |
accaattgacaaacttaggatatttacctgccatgaatcataagcagtattgagaagaaaaagtggtgttctaacactgacaatcaaattctgagggaag |
100 |
Q |
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| T |
45668373 |
accaattgacaaacttaggatatttacctgccatgaatcataagcagtattgagaagaaaaagtggtgttctaacactggcaatcaaattctgagggaag |
45668274 |
T |
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| Q |
101 |
aaacactgaaaaaggagtaataaaaccagtcactgaaagttcaagttataagcaagcattagcagagatatctattttctgttctttcgaatgaaactaa |
200 |
Q |
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| T |
45668273 |
aaacactgaaaaaggagtaataaaaccagtcactgaaagttcaagttataagcaagcattagcagagagatctattttctgttcttttgaatgaaactaa |
45668174 |
T |
|
| Q |
201 |
gact-cctaactagttgacaaaattgaaatcaattatcaatgattatgattaccgatgtaggatcaaggtgattagtacaaatctgcggtagattcttct |
299 |
Q |
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| T |
45668173 |
gactccctaactagttgacaaaattgaaatcaattatcaatgattatgattaccgatgtaggatcaaggtgattagtacaaatctgcggtagattcttct |
45668074 |
T |
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| Q |
300 |
gtgcttcctacaatgatcaaacaaataatt |
329 |
Q |
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| T |
45668073 |
gtgcttcctacaatgatcaaacaaataatt |
45668044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 37971857 - 37971949
Alignment:
| Q |
19 |
gatatttacctgccatgaatcataagcagtattgagaagaaaaagtggtgttctaacactgacaatcaaattctgagggaagaaacactgaaa |
111 |
Q |
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| T |
37971857 |
gatatttacctgccacgagtcataggcagtattaagaatgaatagcggggttctgacactggcaatcaagttctcaggaaagaagcactgaaa |
37971949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 51342974 - 51343058
Alignment:
| Q |
24 |
ttacctgccatgaatcataagcagtattgagaagaaaaagtggtgttctaacactgacaatcaaattctgagggaagaaacactg |
108 |
Q |
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|||||||||| | ||||||||| | |||||||||||| ||||| || || ||||| |||| |||| ||||||||| || ||||| |
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| T |
51342974 |
ttacctgccaagtatcataagctgcattgagaagaaatagtggcgtccttacacttgcaattaaatgctgagggaaaaagcactg |
51343058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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