View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17764_high_9 (Length: 263)
Name: NF17764_high_9
Description: NF17764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17764_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 5333071 - 5333311
Alignment:
| Q |
14 |
agggggagctgtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaacaaagtacaaaagccagaaatcttcatgatgtcactaaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5333071 |
agggggagctgtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaacaaagtacaaaagccagaaaccttcatgatgtcactaaaa |
5333170 |
T |
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| Q |
114 |
cctcaaaatgacccttctttctaaaccttaaaccagaaaaagatagtattaagatgttgaagagaggaggaaggtaactgaaggtatattagaaagcata |
213 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5333171 |
cctcaaaatgacccttctttctaaaccctaaaccagaaaaagatagtattaagatgttgaagagaggaggaaggtaactgaaggtatattagaaagcata |
5333270 |
T |
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| Q |
214 |
ttaaaggcataaggaaagacaagtaacaaaggacaaaaaat |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
5333271 |
ttaaaggcataaggaaagacaagtaacaaaggacaaaaaat |
5333311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 5350790 - 5351030
Alignment:
| Q |
14 |
agggggagctgtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaacaaagtacaaaagccagaaatcttcatgatgtcactaaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5350790 |
agggggagctgtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaacaaagtacaaaagccagaaaccttcatgatgtcactaaaa |
5350889 |
T |
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| Q |
114 |
cctcaaaatgacccttctttctaaaccttaaaccagaaaaagatagtattaagatgttgaagagaggaggaaggtaactgaaggtatattagaaagcata |
213 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350890 |
cctcaaaatgacccttctttctaaaccctaaaccagaaaaagatagtattaagatgttgaagagaggaggaaggtaactgaaggtatattagaaagcata |
5350989 |
T |
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| Q |
214 |
ttaaaggcataaggaaagacaagtaacaaaggacaaaaaat |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350990 |
ttaaaggcataaggaaagacaagtaacaaaggacaaaaaat |
5351030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 5330181 - 5330220
Alignment:
| Q |
214 |
ttaaaggcataaggaaagacaagtaacaaaggacaaaaaa |
253 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |
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| T |
5330181 |
ttaaaagcataaggaaagacaagtaacaaaggacaaaaaa |
5330220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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