View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17764_low_1 (Length: 773)

Name: NF17764_low_1
Description: NF17764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17764_low_1
NF17764_low_1
[»] chr6 (4 HSPs)
chr6 (1-773)||(30498674-30499442)
chr6 (673-748)||(17461229-17461304)
chr6 (671-773)||(14813053-14813155)
chr6 (498-547)||(14816926-14816975)
[»] chr7 (2 HSPs)
chr7 (671-773)||(14579973-14580075)
chr7 (671-764)||(15996985-15997078)
[»] chr2 (4 HSPs)
chr2 (671-771)||(8309701-8309801)
chr2 (489-538)||(31482728-31482777)
chr2 (673-761)||(29497727-29497815)
chr2 (468-535)||(29501463-29501530)
[»] chr1 (5 HSPs)
chr1 (671-773)||(2357985-2358087)
chr1 (408-547)||(52779712-52779851)
chr1 (673-761)||(52775950-52776038)
chr1 (498-547)||(2361685-2361734)
chr1 (498-563)||(13083997-13084062)
[»] chr4 (8 HSPs)
chr4 (671-773)||(10636377-10636479)
chr4 (672-773)||(23169377-23169478)
chr4 (671-764)||(5237604-5237697)
chr4 (498-547)||(10654865-10654914)
chr4 (498-547)||(10869010-10869059)
chr4 (498-547)||(5241468-5241517)
chr4 (673-761)||(22178864-22178952)
chr4 (406-547)||(35089199-35089340)
[»] chr8 (2 HSPs)
chr8 (671-761)||(187989-188079)
chr8 (501-547)||(44231137-44231183)
[»] scaffold0329 (2 HSPs)
scaffold0329 (408-547)||(13041-13180)
scaffold0329 (673-761)||(9279-9367)
[»] chr3 (4 HSPs)
chr3 (408-547)||(12298432-12298571)
chr3 (501-547)||(19584820-19584866)
chr3 (673-761)||(19588633-19588721)
chr3 (406-544)||(17477632-17477770)
[»] chr5 (2 HSPs)
chr5 (671-749)||(9280203-9280281)
chr5 (500-546)||(30997941-30997987)


Alignment Details
Target: chr6 (Bit Score: 503; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 773
Target Start/End: Complemental strand, 30499442 - 30498674
Alignment:
Q  1 catttaagatcagggat-taggacatctaaaatactttctgagattagaagtggctcaacctaagcgtgcgcgcatagctttatgtcaaaggaaatac-g 98  Q
    |||| |||||||||||| ||||||| |||||||||||| ||||||||||||||||||  | ||||| |||    ||| |||||||| ||||||||||  |    
T  30499442 cattcaagatcagggatctaggaca-ctaaaatactttatgagattagaagtggctcttc-taagcttgc----atatctttatgtaaaaggaaatattg 30499349  T
Q  99 aatagacatgctcactaattcaggattcctggactctaaagaagtatgtactccttctgatccatccatcaaattacataatgattacttgcatccatat 198  Q
      |||||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||  ||||||||||||||||||||||||||| ||  ||||||||     
T  30499348 tttagacatgctcagtaattcaagattcctggactctaaacaagtatgtactccgtccaatccatccatcaaattacataatgattcctcacatccatac 30499249  T
Q  199 actgatattccagcttatagaaggcttgtaggaagattactttatctcaatgcaacctggcctgacatcactttttctatccaacaaatgatccaatttt 298  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||| ||  || || |||||||| ||||||||    
T  30499248 actgatattccagcttatagaaggcttgtaggcatattactttatctcaatgcaaccagacctgacatcactattattacccgacaaatgagccaatttt 30499149  T
Q  299 tatctaactcttcacaaaatcat-acagtgcatctctcagagtgctcaagtatctcaagtcttgtcttggtaaaggtcttttctttcccataaattgccc 397  Q
    |||||||| || |||||| | || ||| |||| |||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| |||    
T  30499148 tatctaaccctacacaaacttattacaatgcacctctcagagtgctcaaatatctcaagacttgtcttggtaaaggttttttctttcccataaattcccc 30499049  T
Q  398 cctttaccttcaagggttctctgatgctgattgggaagattgtcaagataccataaggtccatctcttgccagtgttgtttccttggatattctctaata 497  Q
    |||||||||||||| ||||||||| | |||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30499048 cctttaccttcaagagttctctgaagttgattgggcagattgtctggataccataaggtccatctcttgccagtgttgtttccttggatattctctaata 30498949  T
Q  498 tcttggagaacaaagaaacaaatcactgtttctaggtcctcctctgaagcaggatattgtgctttagttgctgacacctatgaacttcaatggctcttat 597  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30498948 tcttggagaacaaagaaacaactcactgtt-ctaggtcctcctctgaaccatgatattgtgctttagttgctgacacctatgaacttcaatggctcttat 30498850  T
Q  598 acttaattgaagacttgcaagtttagtgtatcaagttacctattttatattttgagaatcagagtgcaccctcgcttgttcttcgttcccaatgagcgtt 697  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30498849 acttaattaaagacttgcaagtttagtgtatcaagttaccaattttatattttgagaatcagagtgcaccctagcttgttcttcgttcccaatgagcgtt 30498750  T
Q  698 caacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaattggggctttcact 773  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30498749 caacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaattggggctttcact 30498674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 673 - 748
Target Start/End: Complemental strand, 17461304 - 17461229
Alignment:
Q  673 ttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaa 748  Q
    ||||||| |||||||||||||||||||||||||||||||||||  ||||| || ||||| ||||||||||||||||    
T  17461304 ttgttctccgttcccaatgagcgttcaacggtgcgactccaagagatgtaattggaaccattgagtttgggagtaa 17461229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 671 - 773
Target Start/End: Complemental strand, 14813155 - 14813053
Alignment:
Q  671 gcttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaattggggctttc 770  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||| || || || |||||||||| ||| |||||||| || || |||||||| | |||    
T  14813155 gcttgttcttcgttcccaacgagcgttcaacagtgcgactccaagcgatataattggaaccgttgaatttaggagtaatggaaagagaattgggaccttc 14813056  T
Q  771 act 773  Q
    |||    
T  14813055 act 14813053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 498 - 547
Target Start/End: Original strand, 14816926 - 14816975
Alignment:
Q  498 tcttggagaacaaagaaacaaatcactgtttctaggtcctcctctgaagc 547  Q
    |||||||||||||||||||||||||| || ||||| || |||||||||||    
T  14816926 tcttggagaacaaagaaacaaatcacagtatctagatcttcctctgaagc 14816975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 671 - 773
Target Start/End: Complemental strand, 14580075 - 14579973
Alignment:
Q  671 gcttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaattggggctttc 770  Q
    |||||||||||||||||||||| | |||||| || | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||    
T  14580075 gcttgttcttcgttcccaatgatcattcaacagttctactccaagcaatgtaattggaaccgttgagtttgggagtaatagagagtgaattgggactctc 14579976  T
Q  771 act 773  Q
    |||    
T  14579975 act 14579973  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 671 - 764
Target Start/End: Complemental strand, 15997078 - 15996985
Alignment:
Q  671 gcttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaattggg 764  Q
    ||||||||||||||||||| || |||||||| || | ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  15997078 gcttgttcttcgttcccaaagatcgttcaacagttctactccaagcaatgtaattggaaccgttgagtttgggagtaatagagagtgaattggg 15996985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 9e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 671 - 771
Target Start/End: Complemental strand, 8309801 - 8309701
Alignment:
Q  671 gcttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaattggggctttc 770  Q
    |||| ||||||||||| || || | |||||| ||| ||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  8309801 gcttattcttcgttcctaaagaacattcaacagtgtgactccaagaaatgtagttggaaccgttgagtttgggagtaatggagagtgaattggggctttc 8309702  T
Q  771 a 771  Q
    |    
T  8309701 a 8309701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 489 - 538
Target Start/End: Complemental strand, 31482777 - 31482728
Alignment:
Q  489 tctctaatatcttggagaacaaagaaacaaatcactgtttctaggtcctc 538  Q
    ||||| |||||||||||||||||||||||||||||||| ||||| |||||    
T  31482777 tctctcatatcttggagaacaaagaaacaaatcactgtatctagatcctc 31482728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 673 - 761
Target Start/End: Complemental strand, 29497815 - 29497727
Alignment:
Q  673 ttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaatt 761  Q
    ||||||||||||||||| || |||| ||  |||||| || ||||||||||||| |||||| ||||||| | ||| ||||| ||||||||    
T  29497815 ttgttcttcgttcccaacgaacgttgaatagtgcgattctaagcaatgtagttcgaaccgatgagtttagtagtgatagaaagtgaatt 29497727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 535
Target Start/End: Original strand, 29501463 - 29501530
Alignment:
Q  468 cagtgttgtttccttggatattctctaatatcttggagaacaaagaaacaaatcactgtttctaggtc 535  Q
    ||||||| |||| | ||| |||| ||||| ||||||||||| ||||||||||| | ||||||||||||    
T  29501463 cagtgttttttcttaggaaattcactaatttcttggagaactaagaaacaaattattgtttctaggtc 29501530  T

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Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 671 - 773
Target Start/End: Complemental strand, 2358087 - 2357985
Alignment:
Q  671 gcttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaattggggctttc 770  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| || || || |||||||||| |||||||||||| || || |||||||| | |||    
T  2358087 gcttgttcttcgttcccaacgagcgttcaacggtgcgactccaagcgatataattggaaccgttgaatttgggagtaatggaaagagaattgggaccttc 2357988  T
Q  771 act 773  Q
    |||    
T  2357987 act 2357985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 547
Target Start/End: Original strand, 52779712 - 52779851
Alignment:
Q  408 caagggttctctgatgctgattgggaagattgtcaagataccataaggtccatctcttgccagtgttgtttccttggatattctctaatatcttggagaa 507  Q
    |||||||| |||||||| ||||||| || |||||  || |||| ||| || || ||| ||||||| | |||| | ||  ||||||| || || |||||||    
T  52779712 caagggttttctgatgcagattgggcaggttgtcttgacaccagaagatctatttctggccagtgctttttcttaggcaattctcttatttcatggagaa 52779811  T
Q  508 caaagaaacaaatcactgtttctaggtcctcctctgaagc 547  Q
    ||||||||||||||||||| |||||||| || ||||||||    
T  52779812 caaagaaacaaatcactgtatctaggtcttcatctgaagc 52779851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 673 - 761
Target Start/End: Complemental strand, 52776038 - 52775950
Alignment:
Q  673 ttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaatt 761  Q
    |||||||||||||||||||| |||| ||| || ||| |||| ||||| || ||||||||  | || || ||||||||||| ||||||||    
T  52776038 ttgttcttcgttcccaatgaacgttgaaccgtacgattccatgcaatataattagaaccagtaagcttaggagtaatagaaagtgaatt 52775950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 547
Target Start/End: Original strand, 2361685 - 2361734
Alignment:
Q  498 tcttggagaacaaagaaacaaatcactgtttctaggtcctcctctgaagc 547  Q
    |||||||||||||||||||||||||| || ||||| || || ||||||||    
T  2361685 tcttggagaacaaagaaacaaatcacagtctctagatcttcatctgaagc 2361734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 563
Target Start/End: Original strand, 13083997 - 13084062
Alignment:
Q  498 tcttggagaacaaagaaacaaatcactgtttctaggtcctcctctgaagcaggatattgtgcttta 563  Q
    ||||||||||| ||||||||||||| ||||||||| ||||| |||  ||||| |||| | ||||||    
T  13083997 tcttggagaaccaagaaacaaatcattgtttctagatcctcatctatagcagaatatagggcttta 13084062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 671 - 773
Target Start/End: Complemental strand, 10636479 - 10636377
Alignment:
Q  671 gcttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaattggggctttc 770  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||||||| || || |||||||||| ||| ||||||||||| || |||||||| | |||    
T  10636479 gcttattcttcgttcccaacgagcgttcaacagtgcgactccaagcaatataattggaaccgttgaatttaggagtaatagaaagagaattgggaccttc 10636380  T
Q  771 act 773  Q
    |||    
T  10636379 act 10636377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 672 - 773
Target Start/End: Original strand, 23169377 - 23169478
Alignment:
Q  672 cttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaattggggctttca 771  Q
    |||||||||||||||||| || |||||||| || ||||||||||| ||||| || |||||  |||||||||||||||| ||||| |||||||| ||||||    
T  23169377 cttgttcttcgttcccaacgaacgttcaaccgtacgactccaagctatgtaattggaaccagtgagtttgggagtaatggagagagaattgggactttca 23169476  T
Q  772 ct 773  Q
    ||    
T  23169477 ct 23169478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 671 - 764
Target Start/End: Complemental strand, 5237697 - 5237604
Alignment:
Q  671 gcttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaattggg 764  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||| || || || |||||||||| ||| |||||||| || || ||||||||    
T  5237697 gcttgttcttcgttcccaacgagcgttcaacagtgcgactccaagcgatataattggaaccgttgaatttaggagtaatggaaagagaattggg 5237604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 498 - 547
Target Start/End: Original strand, 10654865 - 10654914
Alignment:
Q  498 tcttggagaacaaagaaacaaatcactgtttctaggtcctcctctgaagc 547  Q
    |||||||||||||||||||||||||| |||||||| || |||||||||||    
T  10654865 tcttggagaacaaagaaacaaatcacagtttctagatcttcctctgaagc 10654914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 498 - 547
Target Start/End: Original strand, 10869010 - 10869059
Alignment:
Q  498 tcttggagaacaaagaaacaaatcactgtttctaggtcctcctctgaagc 547  Q
    |||||||||||||||||||||||||| |||||||| || |||||||||||    
T  10869010 tcttggagaacaaagaaacaaatcacagtttctagatcttcctctgaagc 10869059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 498 - 547
Target Start/End: Original strand, 5241468 - 5241517
Alignment:
Q  498 tcttggagaacaaagaaacaaatcactgtttctaggtcctcctctgaagc 547  Q
    |||||||||||||||||||||||||| || ||||| || |||||||||||    
T  5241468 tcttggagaacaaagaaacaaatcacagtatctagatcttcctctgaagc 5241517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 673 - 761
Target Start/End: Original strand, 22178864 - 22178952
Alignment:
Q  673 ttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaatt 761  Q
    |||||||||||||||||||| |||| ||| || ||| |||| ||||| || ||||||||  | || || ||||||||||| ||||||||    
T  22178864 ttgttcttcgttcccaatgaacgttgaaccgtacgattccatgcaatataattagaaccagtaagcttaggagtaatagaaagtgaatt 22178952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 547
Target Start/End: Original strand, 35089199 - 35089340
Alignment:
Q  406 ttcaagggttctctgatgctgattgggaagattgtcaagataccataaggtccatctcttgccagtgttgtttccttggatattctctaatatcttggag 505  Q
    ||||||| ||| | ||||||||||||| || ||||  |||||| | ||| ||||| ||| | || ||||  || |||||| | ||||| || || ||| |    
T  35089199 ttcaaggtttcacagatgctgattgggcaggttgtttagatactagaagatccatttctggtcattgtttctttcttggagactctctcatttcatggcg 35089298  T
Q  506 aacaaagaaacaaatcactgtttctaggtcctcctctgaagc 547  Q
    ||| |||||||||| |||||||||||| || || ||||||||    
T  35089299 aaccaagaaacaaaccactgtttctagatcatcttctgaagc 35089340  T

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Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 671 - 761
Target Start/End: Complemental strand, 188079 - 187989
Alignment:
Q  671 gcttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaatt 761  Q
    |||| |||||||||||||| || |||||||| ||||||||||||||||| ||||| ||| |||||||||| ||||||||||| || |||||    
T  188079 gcttattcttcgttcccaaagaacgttcaacagtgcgactccaagcaatatagttggaatcgttgagtttaggagtaatagaaagagaatt 187989  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 501 - 547
Target Start/End: Original strand, 44231137 - 44231183
Alignment:
Q  501 tggagaacaaagaaacaaatcactgtttctaggtcctcctctgaagc 547  Q
    ||||||||||||||||||| |||||| ||||| || |||||||||||    
T  44231137 tggagaacaaagaaacaaaccactgtgtctagatcttcctctgaagc 44231183  T

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Target: scaffold0329 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 547
Target Start/End: Original strand, 13041 - 13180
Alignment:
Q  408 caagggttctctgatgctgattgggaagattgtcaagataccataaggtccatctcttgccagtgttgtttccttggatattctctaatatcttggagaa 507  Q
    |||||||| |||||||| ||||||| || |||||  || |||| ||| || || ||| ||||||| | |||| | ||  ||||||| || || |||||||    
T  13041 caagggttttctgatgcagattgggcaggttgtcttgacaccagaagatctatttctggccagtgctttttcttaggcaattctcttatttcatggagaa 13140  T
Q  508 caaagaaacaaatcactgtttctaggtcctcctctgaagc 547  Q
    ||||||||||||||||||| |||||||| || ||||||||    
T  13141 caaagaaacaaatcactgtatctaggtcttcatctgaagc 13180  T

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Target: scaffold0329; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 673 - 761
Target Start/End: Complemental strand, 9367 - 9279
Alignment:
Q  673 ttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaatt 761  Q
    |||||||||||||||||||| |||| ||| || ||| |||| ||||| || ||||||||  | || || ||||||||||| ||||||||    
T  9367 ttgttcttcgttcccaatgaacgttgaaccgtacgattccatgcaatataattagaaccagtaagcttaggagtaatagaaagtgaatt 9279  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 408 - 547
Target Start/End: Original strand, 12298432 - 12298571
Alignment:
Q  408 caagggttctctgatgctgattgggaagattgtcaagataccataaggtccatctcttgccagtgttgtttccttggatattctctaatatcttggagaa 507  Q
    |||||||| |||||||| ||||||| || |||||  || |||| ||| || || ||| ||||||| | |||| | ||  ||||||| || || |||||||    
T  12298432 caagggttttctgatgcagattgggcaggttgtcttgacaccagaagatctatttctggccagtgctttttcttaggcaattctcttatttcatggagaa 12298531  T
Q  508 caaagaaacaaatcactgtttctaggtcctcctctgaagc 547  Q
    | ||||||||||||||||| |||||||| || ||||||||    
T  12298532 cgaagaaacaaatcactgtatctaggtcttcatctgaagc 12298571  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 501 - 547
Target Start/End: Complemental strand, 19584866 - 19584820
Alignment:
Q  501 tggagaacaaagaaacaaatcactgtttctaggtcctcctctgaagc 547  Q
    |||||||||||||||||||||||||| |||||||| || ||||||||    
T  19584866 tggagaacaaagaaacaaatcactgtatctaggtcttcatctgaagc 19584820  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 673 - 761
Target Start/End: Original strand, 19588633 - 19588721
Alignment:
Q  673 ttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaatagagagtgaatt 761  Q
    |||||||||||||||||||| |||| ||| || ||| |||| ||||| || ||||||||  | || || ||||||||||| ||||||||    
T  19588633 ttgttcttcgttcccaatgaacgttgaaccgttcgattccatgcaatataattagaaccagtaagcttaggagtaatagaaagtgaatt 19588721  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 544
Target Start/End: Complemental strand, 17477770 - 17477632
Alignment:
Q  406 ttcaagggttctctgatgctgattggg-aagattgtcaagataccataaggtccatctcttgccagtgttgtttccttggatattctctaatatcttgga 504  Q
    ||||||| ||||| ||||||||||||| ||||| ||  |||||||| ||| ||||| ||| | || |||| ||||||| || ||||  | ||||| ||||    
T  17477770 ttcaaggcttctcagatgctgattgggcaagat-gtagagataccaaaagatccatatctggacaatgttttttccttcgaaattccttgatatcatgga 17477672  T
Q  505 gaacaaagaaacaaatcactgtttctaggtcctcctctga 544  Q
    | || |||||| || ||||||||||||| ||||| |||||    
T  17477671 ggactaagaaaaaactcactgtttctagatcctcttctga 17477632  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 671 - 749
Target Start/End: Complemental strand, 9280281 - 9280203
Alignment:
Q  671 gcttgttcttcgttcccaatgagcgttcaacggtgcgactccaagcaatgtagttagaaccgttgagtttgggagtaat 749  Q
    ||||||||||||||||||| || | |  ||| || ||| ||||||||||||| || |||||||||||||||||||||||    
T  9280281 gcttgttcttcgttcccaaagaacttctaacagtacgattccaagcaatgtaattggaaccgttgagtttgggagtaat 9280203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 500 - 546
Target Start/End: Complemental strand, 30997987 - 30997941
Alignment:
Q  500 ttggagaacaaagaaacaaatcactgtttctaggtcctcctctgaag 546  Q
    |||||| |||||||| |||||||||||||| |||||||| |||||||    
T  30997987 ttggaggacaaagaagcaaatcactgtttccaggtcctcatctgaag 30997941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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