View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17764_low_14 (Length: 227)
Name: NF17764_low_14
Description: NF17764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17764_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 5178889 - 5179093
Alignment:
| Q |
1 |
gatggagttcagaagaagataaagcacttcaaaagctcgtggagaagcacggtgcgagaaactgatggattctaagcaaatcgataccaggccggtcagg |
100 |
Q |
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| T |
5178889 |
gatggagttcagaagaagatgaagcacttcaaaagctcgtggagaagcacggtgcgagaaactgatcgattctaagcaaatcgataccaggccggtcagg |
5178988 |
T |
|
| Q |
101 |
gaaatcatgcaggttatgttggtgtaatctgcttttaccatgcttgatttggaaactctattaagaatcattttctcgactaattatgctggatcccgat |
200 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5178989 |
gaaatcatgcaggttacgttggtgtaatctgctttcaccatgctcgatttggaaacgctattaagaatcattttctcgactaattatgctggatcccgat |
5179088 |
T |
|
| Q |
201 |
gatgt |
205 |
Q |
| |
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||||| |
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| T |
5179089 |
gatgt |
5179093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 5280703 - 5280907
Alignment:
| Q |
1 |
gatggagttcagaagaagataaagcacttcaaaagctcgtggagaagcacggtgcgagaaactgatggattctaagcaaatcgataccaggccggtcagg |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
5280703 |
gatggagttcagaagaagatgaagcacttcaaaagctcgtggagaagcatggtgcgagaaactcatcgattctaagcaaatcgataccaggccggtcagg |
5280802 |
T |
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| Q |
101 |
gaaatcatgcaggttatgttggtgtaatctgcttttaccatgcttgatttggaaactctattaagaatcattttctcgactaattatgctggatcccgat |
200 |
Q |
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|||||||||||| ||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5280803 |
gaaatcatgcagtttacgttggtgtaatctgctttcaccatgctcgatttggaaacgctattaagaatcattttctcgactaattatgctggatcccgat |
5280902 |
T |
|
| Q |
201 |
gatgt |
205 |
Q |
| |
|
||||| |
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| T |
5280903 |
gatgt |
5280907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 5138170 - 5138033
Alignment:
| Q |
3 |
tggagttcagaagaagataaagcacttcaaaagctcgtggagaagcacggtgcgagaaactgatggattctaagcaaatcgataccaggccggtcaggga |
102 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
5138170 |
tggagtccagaagaagatgaagcacttcaaaagctcgtggaaaagcacggtgcgagaaactggtcgattctaagcaaatcgataccaggccggtcaggga |
5138071 |
T |
|
| Q |
103 |
aatcatgcaggttatgttggtgtaatctgcttttacca |
140 |
Q |
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|||||||||||||| ||||||||||| ||||| |||| |
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| T |
5138070 |
aatcatgcaggttaccttggtgtaatcagctttcacca |
5138033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 5924294 - 5924156
Alignment:
| Q |
2 |
atggagttcagaagaagataaagcacttcaaaagctcgtggagaagcacggtgcgagaaactgatggattctaagcaaatcgataccaggccggtcaggg |
101 |
Q |
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||||||| ||||||||||| |||||||||||||||| || ||||||||||| |||||||||| | |||| ||||||||||||||||||||||||| ||| |
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| T |
5924294 |
atggagtccagaagaagatgaagcacttcaaaagcttgtagagaagcacgggccgagaaactggtcgattataagcaaatcgataccaggccggtctggg |
5924195 |
T |
|
| Q |
102 |
aaatcatgcaggttatgttggtgtaatctgcttttacca |
140 |
Q |
| |
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||||||||||||||| |||||||||||| ||||| |||| |
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| T |
5924194 |
aaatcatgcaggttacgttggtgtaatcagctttcacca |
5924156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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