View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17764_low_2 (Length: 684)

Name: NF17764_low_2
Description: NF17764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17764_low_2
NF17764_low_2
[»] chr7 (6 HSPs)
chr7 (28-667)||(26975213-26975846)
chr7 (138-188)||(40561719-40561769)
chr7 (136-188)||(27571936-27571988)
chr7 (202-242)||(36797169-36797209)
chr7 (136-188)||(40491652-40491704)
chr7 (136-188)||(45557439-45557491)
[»] chr1 (8 HSPs)
chr1 (136-188)||(34915140-34915192)
chr1 (138-188)||(48548975-48549025)
chr1 (138-187)||(44786879-44786928)
chr1 (136-188)||(35961442-35961494)
chr1 (153-188)||(24697574-24697609)
chr1 (136-188)||(441594-441646)
chr1 (136-188)||(5268293-5268345)
chr1 (136-172)||(29759709-29759745)
[»] chr8 (2 HSPs)
chr8 (136-187)||(16972023-16972074)
chr8 (136-188)||(18123300-18123352)
[»] chr6 (7 HSPs)
chr6 (138-188)||(32888918-32888968)
chr6 (138-188)||(34620960-34621010)
chr6 (138-188)||(34748397-34748447)
chr6 (139-188)||(1499974-1500023)
chr6 (138-188)||(882760-882810)
chr6 (136-186)||(25208702-25208752)
chr6 (191-243)||(13687258-13687310)
[»] chr5 (4 HSPs)
chr5 (136-188)||(117455-117507)
chr5 (136-170)||(24036623-24036657)
chr5 (141-187)||(34443050-34443096)
chr5 (138-183)||(4306591-4306636)
[»] chr2 (3 HSPs)
chr2 (136-188)||(44439328-44439380)
chr2 (136-188)||(15220820-15220872)
chr2 (136-188)||(16518852-16518904)
[»] chr4 (1 HSPs)
chr4 (136-184)||(22683942-22683990)
[»] chr3 (1 HSPs)
chr3 (138-170)||(47278799-47278831)


Alignment Details
Target: chr7 (Bit Score: 592; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 28 - 667
Target Start/End: Original strand, 26975213 - 26975846
Alignment:
28 aaatactagaaatcttagtttgatacatagtataagttacacacactcaaacttgatttcgaaaaaatgtttgggtgtgacctgcaaaagctgattttag 127  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
26975213 aaatactagaaatcttagtttgatacata---taagttacacacactcaaacttgatttcgaaaaaatgtttgggtgtgatctgcgaaagctgattttag 26975309  T
128 ttataagtagtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgagacaaattttaatgtaaaaatcagatttagagataaaaac 227  Q
    ||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26975310 ttataagt---gagttgaatgtaaaatgatttatgtttgaatacgtttatgtaaaagtgagacaaattttaatgtaaaaatcagatttagagataaaaac 26975406  T
228 tacaaatcataacttcaatttaaaatcaattatacttgaacacgttcaaacgcatcaaaagcaattctacatatccataatcaattttaactcatgatca 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26975407 tacaaatcataacttcaatttaaaatcaattatacttgaacacgttcaaacgcatcaaaagcaattctacatatccataatcaattttaactcatgatca 26975506  T
328 acggtgaaatcaaacacacttagtggatgtttgggttcgtggagcgatggttagaattacgatgaaccatcacaattttgacaaaaactaaactcacaag 427  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
26975507 acagtgaaatcaaacacacttagtggatgtttgggttcgtggagcgatggttagaattacgatgaaccatcacaattttgacaaaaactacactcacaag 26975606  T
428 ttacaacttcaacaaatatttgtgattttgtcaaactgatgacaaatccaaacatatataattagtatcgtttttcccaaagatcatctttggtttctag 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26975607 ttacaacttcaacaaatatttgtgattttgtcaaactgatgacaaatccaaacatatataattagtatcgtttttcccaaagatcatctttggtttctag 26975706  T
528 tctttaaactcatttgaaactttatttcaaacttcgattaaagttttcaaatgtaaaccatttttcaaacttaattttaactaaatttaaattgaagtta 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26975707 tctttaaactcatttgaaactttatttcaaacttcgattaaagttttcaaatgtaaaccatttttcaaacttaattttaactaaatttaaattgaagtta 26975806  T
628 tgttcgcagtttaattgggcttggtattgaacattgacac 667  Q
    ||||||||||||||||||||||||||||||||||||||||    
26975807 tgttcgcagtttaattgggcttggtattgaacattgacac 26975846  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 40561719 - 40561769
Alignment:
138 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||||||| ||||| ||||||||||||| |||| || |||||||||||||    
40561719 tgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgag 40561769  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 27571988 - 27571936
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    |||||||| || ||||||||||||||| ||| |||| |||||||||| |||||    
27571988 agtgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgag 27571936  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 36797169 - 36797209
Alignment:
202 taaaaatcagatttagagataaaaactacaaatcataactt 242  Q
    ||||||||| |||| |||||||||||||||||| |||||||    
36797169 taaaaatcacattttgagataaaaactacaaattataactt 36797209  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 40491704 - 40491652
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||||||||| ||||| |||||||| |||| |||| || |||||||||||||    
40491704 agtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgag 40491652  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 45557491 - 45557439
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||||||||| ||||| |||||| |||||| |||| || |||||||||||||    
45557491 agtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgag 45557439  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 34915192 - 34915140
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||||||| | |||||||||||||||||||||||| || |||||||||||||    
34915192 agtgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgag 34915140  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 48548975 - 48549025
Alignment:
138 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||||||| ||||||||||||||||||  |||| ||||||||||||||||    
48548975 tgagttgaaggtaaaatgatttatgttttgatacatttatgtaaaagtgag 48549025  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 44786879 - 44786928
Alignment:
138 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtga 187  Q
    ||||||||| ||||||||||||||||| |||||| || ||||||||||||    
44786879 tgagttgaatgtaaaatgatttatgttcgaatacattcatgtaaaagtga 44786928  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 35961494 - 35961442
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||||||||| ||||||||||||||||||  |||| || |||||||||||||    
35961494 agtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgag 35961442  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 24697574 - 24697609
Alignment:
153 atgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    |||||||||||||| |||||||||||||||||||||    
24697574 atgatttatgtttggatacgtttatgtaaaagtgag 24697609  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 441594 - 441646
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||| ||||| || ||||||||||||||||||||| ||||| ||||| ||||    
441594 agtgatttgaatgtgaaatgatttatgtttgaatacatttatataaaaatgag 441646  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 5268345 - 5268293
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||||||||| ||||| |||||| ||||||||||  || |||||||||||||    
5268345 agtgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtgag 5268293  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 29759745 - 29759709
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacg 172  Q
    ||||||||||| ||||||||||||||||||| |||||    
29759745 agtgagttgaatgtaaaatgatttatgtttggatacg 29759709  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 16972023 - 16972074
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtga 187  Q
    ||||||||||| |||||||||||| ||||||||||| || ||||||||||||    
16972023 agtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtga 16972074  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 18123352 - 18123300
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||| ||||| |||||||||||| |||| |||||  ||||||||||||||||    
18123352 agtgaattgaaggtaaaatgatttgtgttggaatatatttatgtaaaagtgag 18123300  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 32888918 - 32888968
Alignment:
138 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    |||||||||  ||||||||||||||||||||||  ||||||||||||||||    
32888918 tgagttgaagataaaatgatttatgtttgaatatatttatgtaaaagtgag 32888968  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 34621010 - 34620960
Alignment:
138 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||||||| ||||| ||||||||||||| |||| ||||||||||||||||    
34621010 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgag 34620960  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 34748447 - 34748397
Alignment:
138 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||||||| ||||| ||||||||||||| |||| ||||||||||||||||    
34748447 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgag 34748397  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 1500023 - 1499974
Alignment:
139 gagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    |||||||  ||||| |||||||||||||||||| ||||||||||||||||    
1500023 gagttgagtgtaaattgatttatgtttgaatacatttatgtaaaagtgag 1499974  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 882810 - 882760
Alignment:
138 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||||||| ||||||||||||||||||| |||| || ||| |||||||||    
882810 tgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgag 882760  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 25208752 - 25208702
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtg 186  Q
    ||||||||||| ||||||||||||||||||  |||  ||||||||||||||    
25208752 agtgagttgaatgtaaaatgatttatgtttcgatagatttatgtaaaagtg 25208702  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 13687310 - 13687258
Alignment:
191 aaattttaatgtaaaaatcagatttagagataaaaactacaaatcataacttc 243  Q
    |||||| ||||||||||||| ||||||||| ||||||| ||| || |||||||    
13687310 aaatttgaatgtaaaaatcatatttagagacaaaaacttcaagtcttaacttc 13687258  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 117455 - 117507
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||||||||| ||||||||||| ||||||| |||| | ||||||||||||||    
117455 agtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgag 117507  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 24036657 - 24036623
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaata 170  Q
    ||||||||||| |||||||||||||||||||||||    
24036657 agtgagttgaatgtaaaatgatttatgtttgaata 24036623  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 34443096 - 34443050
Alignment:
141 gttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtga 187  Q
    |||||| ||||||| |||||||||||||||| ||||| |||||||||    
34443096 gttgaaagtaaaataatttatgtttgaatacatttatataaaagtga 34443050  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 4306636 - 4306591
Alignment:
138 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaa 183  Q
    ||||||||| ||||||||||||||||||| |||| || ||||||||    
4306636 tgagttgaatgtaaaatgatttatgtttggatacattcatgtaaaa 4306591  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 44439380 - 44439328
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    |||||||| || ||||| ||||||||||||| ||| |||||||||||||||||    
44439380 agtgagttaaatgtaaagtgatttatgtttggatatgtttatgtaaaagtgag 44439328  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 15220820 - 15220872
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||||||||| ||||| ||||||||||||| |||| || |||| ||||||||    
15220820 agtgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgag 15220872  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 16518904 - 16518852
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 188  Q
    ||||||||||  |||||||||||| |||||| |||| || |||||||||||||    
16518904 agtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgag 16518852  T

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Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 22683990 - 22683942
Alignment:
136 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaag 184  Q
    ||||||||||| |||||||| |||||||||| | || ||||||||||||    
22683990 agtgagttgaaagtaaaatggtttatgtttggacacatttatgtaaaag 22683942  T

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Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 47278831 - 47278799
Alignment:
138 tgagttgaacgtaaaatgatttatgtttgaata 170  Q
    ||||||||| |||||||||||||||||||||||    
47278831 tgagttgaatgtaaaatgatttatgtttgaata 47278799  T

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