View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17764_low_3 (Length: 682)
Name: NF17764_low_3
Description: NF17764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17764_low_3 |
 | |
|
| [»] scaffold0257 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 167 - 461
Target Start/End: Original strand, 3943508 - 3943802
Alignment:
| Q |
167 |
ttcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggaga |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3943508 |
ttcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggaga |
3943607 |
T |
|
| Q |
267 |
gtacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggta |
366 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3943608 |
gtgcatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggta |
3943707 |
T |
|
| Q |
367 |
aaatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacggaaggag |
461 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
3943708 |
aaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggag |
3943802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 168 - 466
Target Start/End: Original strand, 41959555 - 41959853
Alignment:
| Q |
168 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41959555 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttggaagag |
41959654 |
T |
|
| Q |
268 |
tacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
367 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41959655 |
tgtatgagtaaatctacttaaaattgagtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
41959754 |
T |
|
| Q |
368 |
aatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacggaaggagcatta |
466 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
41959755 |
aatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagtatta |
41959853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 168 - 461
Target Start/End: Original strand, 9589377 - 9589670
Alignment:
| Q |
168 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9589377 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
9589476 |
T |
|
| Q |
268 |
tacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
367 |
Q |
| |
|
| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9589477 |
tgcaggagtaaatctacttaaaattaggtcaacatttattagtggaaaataattattgtggagaaaatctagaattcaattaattggtagacaagggtaa |
9589576 |
T |
|
| Q |
368 |
aatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacggaaggag |
461 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
9589577 |
aatagacaaaatgcatacttaaactatgaaatggatatgtattttgaaacaaaaaatttctctaaaatagacatgtattttgaaacggagggag |
9589670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 168 - 417
Target Start/End: Complemental strand, 13984696 - 13984447
Alignment:
| Q |
168 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13984696 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
13984597 |
T |
|
| Q |
268 |
tacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
367 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13984596 |
tgcatgagtaaatctacttaaaattggatcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
13984497 |
T |
|
| Q |
368 |
aatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaac |
417 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
13984496 |
aatagacaacatgtatccttaaactatgaaatggatatgtattttgaaac |
13984447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 41959129 - 41959283
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41959129 |
aaggacaagctagtttgacacaaaagttcatattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
41959228 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatcatccttcaataccaatacatatggttca |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41959229 |
caataccaaaattaattaaattcaatcatccttcaataccaatacatatggttca |
41959283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 13984993 - 13984846
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13984993 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
13984894 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13984893 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
13984846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 3943111 - 3943258
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3943111 |
aaggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
3943210 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3943211 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
3943258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 9588721 - 9588868
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9588721 |
aaggacaatctattttgacacaaaagttcctattatacccttgtctttgattttctccattttacatttatttaccccatctcataattactcccaatac |
9588820 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9588821 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
9588868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 335 - 467
Target Start/End: Complemental strand, 44227976 - 44227844
Alignment:
| Q |
335 |
tctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaa |
434 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||| |||| |
|
|
| T |
44227976 |
tctagaatccaattagttggtatacaagggtaaaatagacaaaatgtatccttaaactatcaaaatgacatgcattttgaaacaaaaaatttctccaaaa |
44227877 |
T |
|
| Q |
435 |
tagacatgtattttgaaacggaaggagcattaa |
467 |
Q |
| |
|
| |||||||||||||||||||| |||| ||||| |
|
|
| T |
44227876 |
tggacatgtattttgaaacggagggagtattaa |
44227844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 44228216 - 44228104
Alignment:
| Q |
31 |
tgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaataccaataccaaaattaa |
130 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||| ||||| ||| ||||||||||||||||| |||| |
|
|
| T |
44228216 |
tgacataaaagttcctattatacccttgttttttatttccttcattttacatttatttaccccatctaataatcacttccaataccaataccaaatttaa |
44228117 |
T |
|
| Q |
131 |
ttaaattcaatca |
143 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
44228116 |
ttaaagtcaatca |
44228104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 1168412 - 1168499
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataatta |
105 |
Q |
| |
|
||||||||| || |||||||||||||||| || | |||||||||||||||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
1168412 |
aaggacaagctattttgacacaaaagttcatagtttacccttgtctttgatttcctccatttt--atttatttaccccgtctcataatta |
1168499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 168 - 456
Target Start/End: Complemental strand, 44277070 - 44276782
Alignment:
| Q |
168 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44277070 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
44276971 |
T |
|
| Q |
268 |
tacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
367 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44276970 |
tgcatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
44276871 |
T |
|
| Q |
368 |
aatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacgga |
456 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
44276870 |
aatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacgga |
44276782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 168 - 461
Target Start/End: Original strand, 19911920 - 19912213
Alignment:
| Q |
168 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19911920 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttaattacgatggattagagtgcagtagtcatgggaaaataatttcttggaagag |
19912019 |
T |
|
| Q |
268 |
tacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
367 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19912020 |
tgcatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
19912119 |
T |
|
| Q |
368 |
aatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacggaaggag |
461 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
19912120 |
aatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggag |
19912213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 168 - 461
Target Start/End: Original strand, 12095169 - 12095462
Alignment:
| Q |
168 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12095169 |
tcaatttttataaacaaattagagagtccaattaattagaagtagttagttacgatagattagagtggagtagtcatgggaaaataatttcttgggagag |
12095268 |
T |
|
| Q |
268 |
tacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
367 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12095269 |
tgcatgagtaaatctacttaaaattgggtctacatttattagtggaaaataattattgtgaagaaaatctagaatccaattaattggtagacaagggtaa |
12095368 |
T |
|
| Q |
368 |
aatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacggaaggag |
461 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| |
|
|
| T |
12095369 |
aatagataaaatgcatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatatattttgaaacggagggag |
12095462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 259 - 461
Target Start/End: Original strand, 38806178 - 38806380
Alignment:
| Q |
259 |
ttgggagagtacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtaga |
358 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38806178 |
ttgggagagtgcatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattatggagaaaatctagaatccaattaattggtaga |
38806277 |
T |
|
| Q |
359 |
caagggtaaaatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacggaag |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | |
|
|
| T |
38806278 |
caagggtaaaatagacaaaatgtatccttaaactatgaaatagacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagg |
38806377 |
T |
|
| Q |
459 |
gag |
461 |
Q |
| |
|
||| |
|
|
| T |
38806378 |
gag |
38806380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 19911560 - 19911704
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
19911560 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccacctcataattactcccaatac |
19911659 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatcatccttcaataccaatac |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19911660 |
caataccaaaattaattaaattcaatcatccttcaataccaatac |
19911704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 12094633 - 12094780
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12094633 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctctattttacatttatttaccccatctcataattactcccaatac |
12094732 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12094733 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
12094780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 44277457 - 44277310
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44277457 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgattttctccattttacatttatttaccccatctcataattactcccaatac |
44277358 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44277357 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
44277310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 38805296 - 38805444
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactc------c |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
38805296 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
38805395 |
T |
|
| Q |
110 |
caataccaataccaaaattaattaaattcaatcatccttcaataccaat |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38805396 |
caataccaataccaaaattaattaaattcaatcatccttcaataccaat |
38805444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 40931677 - 40931819
Alignment:
| Q |
20 |
acaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaataccaat |
119 |
Q |
| |
|
||||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
40931677 |
acaagctagattaacacaaaagttcctattatactcttgtctttgatttcctccattttatgtttatttaccccatctcatagttactcccaataccaat |
40931776 |
T |
|
| Q |
120 |
accaaaattaattaaattcaatcatccttcaataccaatacata |
163 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
40931777 |
accaaaattaattaaagtcaat-atccttcaataccgatacata |
40931819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 254 - 394
Target Start/End: Original strand, 4236415 - 4236562
Alignment:
| Q |
254 |
atttcttgggagagtacatgagtaaatctacttaaaattgggtcaaca-------tttattagtggaaaataattattgtggagaaaatctagaatccaa |
346 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4236415 |
atttcttgggagagtgcatgaataaatccacttaaaattggaccaacacattatatttattagtggaaaataattattgtggagaaaatttagaatccaa |
4236514 |
T |
|
| Q |
347 |
ttaattggtagacaagggtaaaatagacaaaatgtatccttaaactat |
394 |
Q |
| |
|
||||||| || ||||||||||||| | |||||||||||||||||||| |
|
|
| T |
4236515 |
ttaattgcaaggcaagggtaaaatatataaaatgtatccttaaactat |
4236562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 254 - 419
Target Start/End: Original strand, 4227369 - 4227540
Alignment:
| Q |
254 |
atttcttgggagagtacatgagtaaatctacttaaaattgggtcaaca-------tttattagtggaaaataattattgtggagaaaatctagaatccaa |
346 |
Q |
| |
|
||||||||||||| | ||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4227369 |
atttcttgggagactgcatgaataaatccacttaaaattggaccaacacattatatttattagtggaaaataattattgtggagaaaatttagaatccaa |
4227468 |
T |
|
| Q |
347 |
ttaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaa |
419 |
Q |
| |
|
|||||| |||| ||||||||||||| |||||||||||||||||| ||| || ||||||||||| |||||| |
|
|
| T |
4227469 |
ttaatt-gtaggcaagggtaaaatatacaaaatgtatccttaaattatcaaaaatacatgtatttttaaacaa |
4227540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 4226757 - 4226856
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |||||| |
|
|
| T |
4226757 |
aaggacaaactagtttgacacaaa-gttcctattatacccttgtgtttgatttcctccatttt--atttatttaccccatctcataattactctcaatac |
4226853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 4235801 - 4235900
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
4235801 |
aaggacaagctagtttgatacaaa-gttcctattatacccttgtgtttgatttcctccatttt--atttatttacccaatctcataattactctcaatac |
4235897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 19911693 - 19911746
Alignment:
| Q |
110 |
caataccaataccaaaattaattaaattcaatcatccttcaataccaatacata |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19911693 |
caataccaataccaaaattaattaaattcaatcatccttcaataccaatacata |
19911746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 168 - 454
Target Start/End: Complemental strand, 45278307 - 45278021
Alignment:
| Q |
168 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45278307 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
45278208 |
T |
|
| Q |
268 |
tacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
367 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45278207 |
tgcatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
45278108 |
T |
|
| Q |
368 |
aatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacg |
454 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
45278107 |
aatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacg |
45278021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 168 - 456
Target Start/End: Complemental strand, 41306057 - 41305769
Alignment:
| Q |
168 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41306057 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttaggagag |
41305958 |
T |
|
| Q |
268 |
tacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
367 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41305957 |
tgcatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
41305858 |
T |
|
| Q |
368 |
aatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacgga |
456 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
41305857 |
aatagacaaaatatatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacgga |
41305769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 168 - 417
Target Start/End: Original strand, 10647040 - 10647289
Alignment:
| Q |
168 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10647040 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttaggagag |
10647139 |
T |
|
| Q |
268 |
tacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
367 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10647140 |
tgcatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
10647239 |
T |
|
| Q |
368 |
aatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10647240 |
aatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaac |
10647289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 45278703 - 45278555
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45278703 |
aaggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
45278604 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatcatccttcaataccaatacatat |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45278603 |
caataccaaaattaattaaattcaatcatccttcaataccaatacatat |
45278555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 10646643 - 10646790
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10646643 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
10646742 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
163 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10646743 |
caataccaaaattaattaaattgaatcatccttcaataccaatacata |
10646790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 40486455 - 40486308
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40486455 |
aaggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
40486356 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40486355 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
40486308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 41307963 - 41307816
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41307963 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
41307864 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
163 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41307863 |
caatatcaaaattaattaaattcaatcatccttcaataccaatacata |
41307816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 8697900 - 8697757
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8697900 |
aaggacaaactagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
8697801 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatcatccttcaataccaata |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8697800 |
caataccaaaattaattaaattcaatcatccttcaataccaata |
8697757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 401 - 472
Target Start/End: Original strand, 3585666 - 3585737
Alignment:
| Q |
401 |
gacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacggaaggagcattaattatt |
472 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||||||| ||||| ||||||||| |||| |||||||||| |
|
|
| T |
3585666 |
gacaagtattttgaaacaaaattattctctaaaatagacaagtattatgaaacggatggagtattaattatt |
3585737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 168 - 456
Target Start/End: Complemental strand, 25059745 - 25059457
Alignment:
| Q |
168 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25059745 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
25059646 |
T |
|
| Q |
268 |
tacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
367 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25059645 |
tgcatgagtaaatctgcttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
25059546 |
T |
|
| Q |
368 |
aatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacgga |
456 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
25059545 |
aatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacgga |
25059457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 168 - 461
Target Start/End: Complemental strand, 2911154 - 2910861
Alignment:
| Q |
168 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
2911154 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatgaattaaagtgcagtagtcattggaaaataattttttggaagag |
2911055 |
T |
|
| Q |
268 |
tacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
367 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2911054 |
tgcatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
2910955 |
T |
|
| Q |
368 |
aatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacggaaggag |
461 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
2910954 |
aatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctttaaaatagacatgtattttgaaacggagggag |
2910861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 467 - 665
Target Start/End: Original strand, 8901098 - 8901296
Alignment:
| Q |
467 |
attatttttcaatcatgggaagtgaacatatcactgatcctcaaatcacttcaaagcctaaaaatcagaacaacaaatgagatgcaatggcaatttgaat |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8901098 |
attatttttcaatcatgggaagtgaacatatcactgatcctcaaatcacttcaaagcctaaaaatcagaacaacaaatgagatgcaatggcaatttgaat |
8901197 |
T |
|
| Q |
567 |
gttgatgcgccgcgccattctgtactttctacccactcacatgcgtgtgatggaacaacactcttgtctcctaatttacttaatatttttgtttacatt |
665 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8901198 |
gttgatgcgccgcgccattctgtactttctacccactcacacgcgtgtgatggaacaacactcttgtctcctaatttacttaatatttttgtttacatt |
8901296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 2911550 - 2911403
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2911550 |
aaggacaagctaatttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
2911451 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2911450 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
2911403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 25060135 - 25059988
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
25060135 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactctcaatac |
25060036 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25060035 |
caataccaaaattaattaaattcaatcatccttcaataccaatacata |
25059988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 168 - 461
Target Start/End: Complemental strand, 34222353 - 34222060
Alignment:
| Q |
168 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34222353 |
tcaatttttataaacaaattagagagtccaattaattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagag |
34222254 |
T |
|
| Q |
268 |
tacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaa |
367 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
34222253 |
tgcatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctaaaattcaattaattgatagacaagggtaa |
34222154 |
T |
|
| Q |
368 |
aatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacggaaggag |
461 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
34222153 |
aatagacaaaatgtatccttaaattatgaaatggacatgtattttgaaacaaaaaatttctataaaatggacatgtattttaaaacggaaggag |
34222060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 34224380 - 34224254
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34224380 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
34224281 |
T |
|
| Q |
116 |
caataccaaaattaattaaattcaatc |
142 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
34224280 |
caataccaaaattaattaaattcaatc |
34224254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 230; Significance: 1e-126; HSPs: 2)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 200 - 461
Target Start/End: Original strand, 23650 - 23911
Alignment:
| Q |
200 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtacatgagtaaatctacttaaaattgggtcaa |
299 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23650 |
taattaggagtggttagttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa |
23749 |
T |
|
| Q |
300 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgcaat |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23750 |
tatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
23849 |
T |
|
| Q |
400 |
ggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacggaaggag |
461 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
23850 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggatggag |
23911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 23518 - 23641
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23518 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
23617 |
T |
|
| Q |
116 |
caataccaaaattaattaaattca |
139 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
23618 |
caataccaaaattaattaaattca |
23641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 200 - 461
Target Start/End: Complemental strand, 19996585 - 19996324
Alignment:
| Q |
200 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtacatgagtaaatctacttaaaattgggtcaa |
299 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19996585 |
taattaggagtggttagttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa |
19996486 |
T |
|
| Q |
300 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgcaat |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19996485 |
tatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaat |
19996386 |
T |
|
| Q |
400 |
ggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacggaaggag |
461 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
19996385 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggag |
19996324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 19996717 - 19996594
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19996717 |
aaggacaagctagtttgacacaaaagttcctattatacctttgtctttgatttcctccattttacatttatttaccccatctcataattactcccaatac |
19996618 |
T |
|
| Q |
116 |
caataccaaaattaattaaattca |
139 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
19996617 |
caataccaaaattaattaaattca |
19996594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 19996727 - 19996772
Alignment:
| Q |
422 |
aatttctgtaaaatagacatgtattttgaaacggaaggagcattaa |
467 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
19996727 |
aatttctccaaaatagacatgtattttgaaacggagggagtattaa |
19996772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 200 - 461
Target Start/End: Complemental strand, 15305085 - 15304824
Alignment:
| Q |
200 |
taattaggagtagttagttacgatggattagagtgcagtagtcatgggaaaataatttcttgggagagtacatgagtaaatctacttaaaattgggtcaa |
299 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15305085 |
taatttggagtagttagttacgatggattagagtgcaatagtcatgggaaaataatttcttgggagagtgcatgagtaaatctacttaaaattgggtcaa |
15304986 |
T |
|
| Q |
300 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgcaat |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15304985 |
catttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagataagggtaaaatagacaaaatgtatccttaaactatgaaat |
15304886 |
T |
|
| Q |
400 |
ggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacggaaggag |
461 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |||| |
|
|
| T |
15304885 |
ggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttaaaacggagggag |
15304824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 15305206 - 15305094
Alignment:
| Q |
27 |
agtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaataccaataccaaaa |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15305206 |
agtttgacacaaaagttcctattatacccttgtctttgatttcatccattttacatttatttaccccatctcataattactcccaataccaataccaaaa |
15305107 |
T |
|
| Q |
127 |
ttaattaaattca |
139 |
Q |
| |
|
||||||||||||| |
|
|
| T |
15305106 |
ttaattaaattca |
15305094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 31485620 - 31485666
Alignment:
| Q |
97 |
tcataattactcccaataccaataccaaaattaattaaattcaatca |
143 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| ||||||| |
|
|
| T |
31485620 |
tcataattacttcgaataccaataccaaaattaattaaagtcaatca |
31485666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 252 - 456
Target Start/End: Original strand, 19362019 - 19362223
Alignment:
| Q |
252 |
taatttcttgggagagtacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaat |
351 |
Q |
| |
|
|||||||| |||||||| |||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
19362019 |
taatttctagggagagtgcatgagtaaatccacttaaaattgggtcaacatttactggtgtaaaataattattgaggagaacatctagaatccaattaat |
19362118 |
T |
|
| Q |
352 |
tggtagacaagggtaaaatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaa |
451 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
19362119 |
tggtagacaatggtaaaatagacaaaatgtatccttaaactatcaaaatgacatgtattttacaacaaaaaatttctctaaaatggacatgtattttgaa |
19362218 |
T |
|
| Q |
452 |
acgga |
456 |
Q |
| |
|
||||| |
|
|
| T |
19362219 |
acgga |
19362223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 260 - 456
Target Start/End: Original strand, 20543325 - 20543521
Alignment:
| Q |
260 |
tgggagagtacatgagtaaatctacttaaaattgggtcaacatttattagtggaaaataattattgtggagaaaatctagaatccaattaattggtagac |
359 |
Q |
| |
|
||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
20543325 |
tgggaaagtgcatgagtaaatccacttaaaattgggtcaacatttattaatggaaaataattattatggagaaaatctagaatccaattaattggtaggc |
20543424 |
T |
|
| Q |
360 |
aagggtaaaatagacaaaatgtatccttaaactatgcaatggacatgtattttgaaacaaaaaatttctgtaaaatagacatgtattttgaaacgga |
456 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |||| ||||| |||||| ||||||| |
|
|
| T |
20543425 |
aagggtagaatagacaaaatgtatccttaaactatcaaaatgacatgtattttgaaacaaaaactttcttcaaaaacgacatttattttaaaacgga |
20543521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 19361698 - 19361817
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttacatttatttattccatctcataattactcccaatac |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
19361698 |
aaggacaagctagtttgacacaaaagttcctattatacccttgtctttgatttcctccattttatatttatttaccccatctaataattactcccaatac |
19361797 |
T |
|
| Q |
116 |
caataccaaaattaattaaa |
135 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
19361798 |
caataccaaaattaattaaa |
19361817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 20541512 - 20541643
Alignment:
| Q |
16 |
aaggacaagttagtttgacacaaaagttcctattataccctt----gtctttgatttcctccattttacatttatttattccatctcataattactccca |
111 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
20541512 |
aaggacaaactagttcgacacaaaagttcctattatacccttacttgtctttgatttcctctgttttacatttatttacctcatctcataattactcctg |
20541611 |
T |
|
| Q |
112 |
ataccaataccaaaattaattaaattcaatca |
143 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||| |
|
|
| T |
20541612 |
ataccaatatcaaaactaattaaagtcaatca |
20541643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 422 - 470
Target Start/End: Complemental strand, 44568878 - 44568830
Alignment:
| Q |
422 |
aatttctgtaaaatagacatgtattttgaaacggaaggagcattaatta |
470 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||| || ||||| |
|
|
| T |
44568878 |
aatttcttcaaaatggacatgtattttgaaacggaaggagtatgaatta |
44568830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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