View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17764_low_6 (Length: 551)

Name: NF17764_low_6
Description: NF17764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17764_low_6
NF17764_low_6
[»] chr5 (4 HSPs)
chr5 (10-532)||(3181199-3181721)
chr5 (348-380)||(20301089-20301121)
chr5 (348-380)||(20305502-20305534)
chr5 (348-380)||(20309906-20309938)
[»] chr1 (8 HSPs)
chr1 (327-393)||(23896522-23896588)
chr1 (327-386)||(24246880-24246939)
chr1 (91-149)||(24242982-24243040)
chr1 (91-149)||(25478733-25478791)
chr1 (333-374)||(24243248-24243289)
chr1 (424-532)||(23896613-23896721)
chr1 (333-380)||(24222355-24222402)
chr1 (190-272)||(25478352-25478434)
[»] chr7 (2 HSPs)
chr7 (333-388)||(1421544-1421599)
chr7 (253-296)||(27755414-27755457)
[»] chr2 (2 HSPs)
chr2 (336-394)||(7169075-7169133)
chr2 (250-311)||(7168968-7169029)
[»] chr3 (5 HSPs)
chr3 (334-387)||(7398538-7398591)
chr3 (333-392)||(2462896-2462955)
chr3 (342-382)||(7443335-7443375)
chr3 (187-223)||(9562182-9562218)
chr3 (262-302)||(9608640-9608680)


Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 10 - 532
Target Start/End: Complemental strand, 3181721 - 3181199
Alignment:
Q  10 acatcatcaaaagagtcggaatgagaaaatacacacaaacattccctcatcgcacccaaactcaacttaacggttacatcaccataatcaggctgtgaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3181721 acatcatcaaaagagtcggaatgagaaaatacacacaaacattccctcatcgcacccaaactcaacttaacggttacatcaccataatcaggctgtgaaa 3181622  T
Q  110 tctcttgataaatttctttccgcaaatcaagagaaacaatagtacccaagctattattatcatccaaatcataatccgccaaccaattaacagtgccact 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3181621 tctcttgataaatttctttccgcaaatcaagagaaacaatagtacccaagctattattatcatccaaatcataatccgccaaccaattaacagtgccact 3181522  T
Q  210 cacgaatattccctgttgactataaggaatcatcaaagacggaaaatcctcaatccttctccaataatcagtacctaaagtataaacactaacctcagtt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3181521 cacgaatattccctgttgactataaggaatcatcaaagacggaaaatcctcaatccttctccaataatcagtacctaaagtataaacactaacctcagtt 3181422  T
Q  310 ttacaagcatttacattatagcgaaaaacagaaacaaccttataattatcaatgaaaggatcataaccaaaaccatatatagtgtttccatcagaatctc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3181421 ttacaagcatttacattatagcgaaaaacagaaacaaccttataattatcaatgaaaggatcataaccaaaaccatatatagtgtttccatcagaatctc 3181322  T
Q  410 cttctttaggagtatctaaagcgggtaattgcttcaatattctcatggaagggttccaaagaagagctagattaggattgattgcgaaacaaattatacc 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3181321 cttctttaggagtatctaaagcgggtaattgcttcaatattctcatggaagggttccaaagaagagctagattaggattgattgcgaaacaaattatacc 3181222  T
Q  510 gtcgcaagaagcaacgaggcgat 532  Q
    |||||||||||||||||||||||    
T  3181221 gtcgcaagaagcaacgaggcgat 3181199  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 20301121 - 20301089
Alignment:
Q  348 cttataattatcaatgaaaggatcataaccaaa 380  Q
    ||||||||||||||||||||||||||| |||||    
T  20301121 cttataattatcaatgaaaggatcatacccaaa 20301089  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 20305534 - 20305502
Alignment:
Q  348 cttataattatcaatgaaaggatcataaccaaa 380  Q
    ||||||||||||||||||||||||||| |||||    
T  20305534 cttataattatcaatgaaaggatcatacccaaa 20305502  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 20309938 - 20309906
Alignment:
Q  348 cttataattatcaatgaaaggatcataaccaaa 380  Q
    ||||||||||||||||||||||||||| |||||    
T  20309938 cttataattatcaatgaaaggatcatacccaaa 20309906  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 393
Target Start/End: Original strand, 23896522 - 23896588
Alignment:
Q  327 atagcgaaaaacagaaacaaccttataattatcaatgaaaggatcataaccaaaaccatatatagtg 393  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||| |||||    
T  23896522 atagcaaaaaacagaaacaaccttgtaattatgaatgaaaggatcatagccaaaagcatatctagtg 23896588  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 24246880 - 24246939
Alignment:
Q  327 atagcgaaaaacagaaacaaccttataattatcaatgaaaggatcataaccaaaaccata 386  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||| ||||    
T  24246880 atagcaaaaaacagaaacaatcttgtaattatcaatgaaaggatcatagccaaaagcata 24246939  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 24242982 - 24243040
Alignment:
Q  91 ccataatcaggctgtgaaatctcttgataaatttctttccgcaaatcaagagaaacaat 149  Q
    |||||||||||||||||||| ||||| |||  |||||||| ||||||||||||||||||    
T  24242982 ccataatcaggctgtgaaatatcttggtaagattctttccccaaatcaagagaaacaat 24243040  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 25478791 - 25478733
Alignment:
Q  91 ccataatcaggctgtgaaatctcttgataaatttctttccgcaaatcaagagaaacaat 149  Q
    ||||||||||||||||||||||||||||||   ||||||| ||||| ||||||||||||    
T  25478791 ccataatcaggctgtgaaatctcttgataagactctttccccaaatgaagagaaacaat 25478733  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 333 - 374
Target Start/End: Original strand, 24243248 - 24243289
Alignment:
Q  333 aaaaacagaaacaaccttataattatcaatgaaaggatcata 374  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  24243248 aaaaacagaaacaaccttgtaattatcaatgaaagggtcata 24243289  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 532
Target Start/End: Original strand, 23896613 - 23896721
Alignment:
Q  424 tctaaagcgggtaattgcttcaatattctcatggaagggttccaaagaagagctagattaggattgattgcgaaacaaattataccgtcgcaagaagcaa 523  Q
    ||||||| |||||||| ||| ||| |||| |||||||||||||||  ||  || |||| || ||  ||||| |||||||| | |||||||||||||||||    
T  23896613 tctaaagtgggtaatttctttaattttctaatggaagggttccaagtaacggcaagatgagtatcaattgcaaaacaaatgagaccgtcgcaagaagcaa 23896712  T
Q  524 cgaggcgat 532  Q
     ||| ||||    
T  23896713 tgagtcgat 23896721  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 380
Target Start/End: Original strand, 24222355 - 24222402
Alignment:
Q  333 aaaaacagaaacaaccttataattatcaatgaaaggatcataaccaaa 380  Q
    |||||||||||||||||| |||||||| |||||| |||| ||||||||    
T  24222355 aaaaacagaaacaaccttgtaattatcgatgaaacgatcgtaaccaaa 24222402  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 25478434 - 25478352
Alignment:
Q  190 aaccaattaacagtgccactcacgaatattccctgttgactataaggaatcatcaaagacggaaaatcctcaatccttctcca 272  Q
    ||||||||||| |||||||  || | |||||||| || || | |||| ||||||| ||| |||||||||| ||||||||||||    
T  25478434 aaccaattaactgtgccaccgactattattccctctttaccagaagggatcatcatagaaggaaaatcctgaatccttctcca 25478352  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 1421544 - 1421599
Alignment:
Q  333 aaaaacagaaacaaccttataattatcaatgaaaggatcataaccaaaaccatata 388  Q
    |||||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||    
T  1421544 aaaaacagcaacaaccttgtaattatcaatgaaaggatcatatccaaaagcatata 1421599  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 27755457 - 27755414
Alignment:
Q  253 aaatcctcaatccttctccaataatcagtacctaaagtataaac 296  Q
    |||||||  ||||||||| |||||||||||||||||||||||||    
T  27755457 aaatcctttatccttctcgaataatcagtacctaaagtataaac 27755414  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 394
Target Start/End: Original strand, 7169075 - 7169133
Alignment:
Q  336 aacagaaacaaccttataattatcaatgaaaggatcataaccaaaaccatatatagtgt 394  Q
    ||||| ||||||||| ||| ||||| ||||| |||||||||||||||||||||| ||||    
T  7169075 aacagcaacaaccttgtaagtatcattgaaatgatcataaccaaaaccatatattgtgt 7169133  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 7168968 - 7169029
Alignment:
Q  250 ggaaaatcctcaatccttctccaataatcagtacctaaagtataaacactaacctcagtttt 311  Q
    |||||||||| |||||||||||||||||| || || |||||||| ||  |||| ||||||||    
T  7168968 ggaaaatcctgaatccttctccaataatcggtgcccaaagtatagaccttaacttcagtttt 7169029  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 7398538 - 7398591
Alignment:
Q  334 aaaacagaaacaaccttataattatcaatgaaaggatcataaccaaaaccatat 387  Q
    ||||||| ||| ||||||||||||||| | |||||| |||||||||||||||||    
T  7398538 aaaacagcaaccaccttataattatcagttaaaggaacataaccaaaaccatat 7398591  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 392
Target Start/End: Complemental strand, 2462955 - 2462896
Alignment:
Q  333 aaaaacagaaacaaccttataattatcaatgaaaggatcataaccaaaaccatatatagt 392  Q
    |||||||| ||| |||||||||||| || | |||||| ||||||||||||||||| ||||    
T  2462955 aaaaacagtaacgaccttataattaccagttaaaggaacataaccaaaaccatatgtagt 2462896  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 7443335 - 7443375
Alignment:
Q  342 aacaaccttataattatcaatgaaaggatcataaccaaaac 382  Q
    |||||| |||||||||||||||||| ||||||| |||||||    
T  7443335 aacaactttataattatcaatgaaatgatcatacccaaaac 7443375  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 9562182 - 9562218
Alignment:
Q  187 gccaaccaattaacagtgccactcacgaatattccct 223  Q
    |||||||||||||||||||||||||| |||| |||||    
T  9562182 gccaaccaattaacagtgccactcacaaatactccct 9562218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 9608640 - 9608680
Alignment:
Q  262 atccttctccaataatcagtacctaaagtataaacactaac 302  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  9608640 atccttctccaataatcagtgcccaaagtatgaacactaac 9608680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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