View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17764_low_9 (Length: 320)

Name: NF17764_low_9
Description: NF17764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17764_low_9
NF17764_low_9
[»] scaffold0054 (2 HSPs)
scaffold0054 (38-179)||(16765-16905)
scaffold0054 (240-301)||(16643-16704)


Alignment Details
Target: scaffold0054 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 179
Target Start/End: Complemental strand, 16905 - 16765
Alignment:
Q  38 acatacggtgtgcaaaatacagatcaatacaatcaatgtcatcatccaattcaactcaaaacttttgttcaagtannnnnnngaagaatataaggtctaa 137  Q
    |||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||         |||| | | |  |||||    
T  16905 acatacggtgtgcagaatacaaatcaatacaatcaatgtcataatccaattcaactcataacttttgttcaagttttttttttaagagt-ttatatctaa 16807  T
Q  138 tgagagcatatacattattctaacaaattctcttagcacttg 179  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  16806 tgagagcatatgcattattcacacaaattctcttagcacttg 16765  T

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Target: scaffold0054; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 16704 - 16643
Alignment:
Q  240 gttgatattcactttccccttattttcaaagacaatattcctattttagtttctggtgagaa 301  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16704 gttgatagtcactttccccttattttcaaagacaatattcctattttagtttctggtgagaa 16643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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