View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17765_high_1 (Length: 676)
Name: NF17765_high_1
Description: NF17765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17765_high_1 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 629; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 22 - 670
Target Start/End: Complemental strand, 47650686 - 47650038
Alignment:
| Q |
22 |
gttgtcttaaaaaatgcaccttttaatgtcaagaaatggagaaaaattccacaagagacagaaaacaagatagtatcaaaagttttggtaaatcataatc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650686 |
gttgtcttaaaaaatgcaccttttaatgtcaagaaatggagaaaaattccacaagagacagaaaacaagatagtatcaaaagttttggtaaatcataatc |
47650587 |
T |
|
| Q |
122 |
ttgtgccttttaattttatttgattgcttttacagagcactcactatagttttcattttaactgttgagagcaggatacttttgatattgataatacaaa |
221 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650586 |
ttgtgccttttaattttatttgattgcttttacagagtactcactatagttttcattttaactgttgagagcaggatacttttgatattgataatacaaa |
47650487 |
T |
|
| Q |
222 |
gcataacagagatgttattattgatattgctaaaagactatatcgaaatcatagatgtagatttcgtaaacactttagccaatacaagacaaatgagata |
321 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650486 |
gcataacagagatgttattattgatactgctaaaagactatatcgaaatcatagatgtagatttcgtaaacactttagccaatacaagacaaatgagata |
47650387 |
T |
|
| Q |
322 |
gccttggaacataaaccagatgatttaagtgacgaagattggaagtacttggtagattatttttcaagtcctgaattcaaggtatgtttgtattagattt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650386 |
gccttggaacataaaccagatgatttaagtgacgaagattggaagtacttggtagattatttttcaagtcctgaattcaaggtatgtttgtattagattt |
47650287 |
T |
|
| Q |
422 |
actatataaatataggtaatttaattttatacgtaaacatatacgatatttctacttgtattatttacaggaaattagtaacaggaacaaatcaaataaa |
521 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47650286 |
actatataaatataggtaatttaattttatacgtaaacatatactatatttctacttgtattatttacaggaaattagttacaggaacaaatcaaataaa |
47650187 |
T |
|
| Q |
522 |
tctaaacaagttataaatcatagatgtggaaggaagtcatttcaagccgttagctatgatgcggtaaaatataaaatatcaaatctccttttgttggtat |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650186 |
tctaaacaagttataaatcatagatgtggaaggaagtcatttcaagccgttagctatgatgcggtaaaatataaaatatcaaatctccttttgttggtat |
47650087 |
T |
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| Q |
622 |
atttgtcattgacttgataacttatatgtatttatattttgtgatgatg |
670 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47650086 |
atttgtcattgacttgataacttacatgtatttatattttgtgatgatg |
47650038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 111 - 472
Target Start/End: Original strand, 170283 - 170641
Alignment:
| Q |
111 |
aaatcataatcttgtgccttttaattttatttgattgcttttacagagcactcactatagttttcattttaactgttgagagcaggatacttttgatatt |
210 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
170283 |
aaatcataatcttgtgcctttttattttatttgattgcttttacata---ctcattatagttttcattttaattgttgagtgcaggatacttttgatatt |
170379 |
T |
|
| Q |
211 |
gataatacaaagcataacagagatgttattattgatattgctaaaagactatatcgaaatcatagatgtagatttcgtaaacactttagccaatacaaga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
170380 |
gataatacaaagcataacagagatgttattattgatactgctaaaagactatatcgaaatcatagatgtagatttcataaacactttagccaatacaaga |
170479 |
T |
|
| Q |
311 |
caaatgagatagccttggaacataaaccagatgatttaagtgacgaagattggaagtacttggtagattatttttcaagtcctgaattcaaggtatgttt |
410 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
170480 |
caaatgagatagctttggaacataaaccagatgatttaagtgacgaagattggaagtacttggtagattatttttcaagtcctgaattcaatgtatgttt |
170579 |
T |
|
| Q |
411 |
gtattagatttactatataaatataggtaatttaattttatacgtaaacatatacgatattt |
472 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||| ||||||||||||| ||| |||||| |
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| T |
170580 |
gtattatatttactatataaatataggcaatttaattctatacgtaaacatctactatattt |
170641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 546 - 662
Target Start/End: Original strand, 170660 - 170777
Alignment:
| Q |
546 |
tgtggaaggaagtcatttcaagccgttagctatgatgcggtaaaatataaaatatcaaatctcc-ttttgttggtatatttgtcattgacttgataactt |
644 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||| |
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| T |
170660 |
tgtggaaggaagtcatttcaagctgttagctatgacgcggtaaaatatataatatcaaatctcctttttcctagtatatttgtcattgacttgataactt |
170759 |
T |
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| Q |
645 |
atatgtatttatattttg |
662 |
Q |
| |
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|||||||||||||||||| |
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| T |
170760 |
atatgtatttatattttg |
170777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 494 - 670
Target Start/End: Complemental strand, 30754353 - 30754173
Alignment:
| Q |
494 |
aattagtaacaggaacaaatcaaataaatctaaacaagttataaatcatagatgtggaaggaagtcatttcaagccgttagctatgatgcggtaaaatat |
593 |
Q |
| |
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||||||||| |||||||||| |||||| |||||||||||||| ||| |||| |||||||||| | |||||||| ||||||||||| |||||| ||||| |
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| T |
30754353 |
aattagtaaaaggaacaaattaaataagtctaaacaagttattaattgtagacgtggaaggaatttatttcaagttgttagctatgacgcggtataatat |
30754254 |
T |
|
| Q |
594 |
---aaaatatcaaatctc-cttttgttggtatatttgtcattgacttgataacttatatgtatttatattttgtgatgatg |
670 |
Q |
| |
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||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |
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| T |
30754253 |
aaaaaaatataaaatctctctttttttggtatatttatcattgacttgataacttatatctaattatattttgtgatgatg |
30754173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 23 - 152
Target Start/End: Complemental strand, 37333060 - 37332931
Alignment:
| Q |
23 |
ttgtcttaaaaaatgcaccttttaatgtcaagaaatggagaaaaattccacaagagacagaaaacaagatagtatcaaaagttttggtaaatcataatct |
122 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||||||||||||||| ||| || |||| |||||||||||| |||||||||| ||||| |||||| |
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| T |
37333060 |
ttgtcctacaaaatgcaccgtttaatgtcaagaaatggagaaaaattcctcaaaaggaagaatacaagatagtattaaaagttttgataaattgtaatct |
37332961 |
T |
|
| Q |
123 |
tgtgccttttaattttatttgattgctttt |
152 |
Q |
| |
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|||| |||| ||| ||||| ||||||||| |
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| T |
37332960 |
tgtgtttttttattctatttcattgctttt |
37332931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 467 - 543
Target Start/End: Complemental strand, 37332920 - 37332844
Alignment:
| Q |
467 |
atatttctacttgtattatttacaggaaattagtaacaggaacaaatcaaataaatctaaacaagttataaatcata |
543 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| | |||||||||||||||||| | ||||||||||| ||||||| |
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| T |
37332920 |
atatttctatttgtattatttacaggcaattagcgaaaggaacaaatcaaataaagcaaaacaagttattaatcata |
37332844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 593 - 670
Target Start/End: Complemental strand, 92276 - 92197
Alignment:
| Q |
593 |
taaaatatcaaatctcc--ttttgttggtatatttgtcattgacttgataacttatatgtatttatattttgtgatgatg |
670 |
Q |
| |
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||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
92276 |
taaaatatcaaatctcccttttttttggtatatttatcattgacttgataacttatatgtatttatattttgtgacgatg |
92197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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