View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17765_high_6 (Length: 484)
Name: NF17765_high_6
Description: NF17765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17765_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 31177227 - 31176745
Alignment:
| Q |
1 |
tttatttccaattcacatattctttggatgttaagccttagcattcattttctctttagaatgttaaacctaaatagaacaatacatgttcttccaagat |
100 |
Q |
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| T |
31177227 |
tttatttccaattcacatattctttggatgttaagccttagcattcattttctctttacaatgttaaacctaaatagaacaatacatgttcttccaagat |
31177128 |
T |
|
| Q |
101 |
gttaagcctctagaaacaaggatgaattgaaaa-atacattagaataatgctacactcgaacattactgagatgctttactttaaacataaagattgggg |
199 |
Q |
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| T |
31177127 |
gttaagcctctagaaacaatgatgaattgaaaatatacattagaataatgctacactctaacattactgagatgctttactttaaacataaagattgaag |
31177028 |
T |
|
| Q |
200 |
gtagaggaaagtgtccgaatgtaagtatacagacaccaacaaaactgatatagcgattgcagtgatgaatgagctattcctgatatgttctctcagttcc |
299 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31177027 |
gtagaggaaagtgtccgaatgtaagtatacagaaaccgacaaaactgatatagcgattgcagtgatgaatgagctattcctgatatgttctctcagttcc |
31176928 |
T |
|
| Q |
300 |
ttactcttactttctatttcctatttactttctaaatctgtctatatctaacctactaagttctaatgtatctcttaacttatactaatctaacttgttt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31176927 |
ttactcttactttctatttcctatttactttctaaatctgtctatatctaacctactaagttctaatgtatctcttaacttatactaatctaacttgttt |
31176828 |
T |
|
| Q |
400 |
cctaaccataatattttcttcatcacaaacagactaattcacaatacctcctaccctattttctaaaacatgtatatcctatg |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31176827 |
cctaaccataatattttcttcatcacaaacagactaattcacaatacctcctaccctattttctaaaacatgtatatcctatg |
31176745 |
T |
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