View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17765_low_11 (Length: 291)
Name: NF17765_low_11
Description: NF17765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17765_low_11 |
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| [»] scaffold0049 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 285
Target Start/End: Original strand, 43433229 - 43433512
Alignment:
| Q |
2 |
aaagtttaccaaagatcggaacagatgatcggtaaccagaattcacagcatatgatacaccagcaacaactcctatcaagttaaatatgaaaagtgtcgt |
101 |
Q |
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| T |
43433229 |
aaagtttaccaaagatcggaccagatgatcggtaaccagcattcacagcatatgatacaccagcaacaactcctatcaagttaaatatgaaaagtgtcgt |
43433328 |
T |
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| Q |
102 |
tggaggaaccagaagaaatgtccatttgatcttgtacagttctgcagagtctccgttttcatctgatgcttttgaggtcactgtgaagtttgtgtcgact |
201 |
Q |
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| T |
43433329 |
tggaggaaccagaagaaatgtccatttgatcttgtacagttctgcagagtctccgttttcatctgatgcttttgaggtcactgtgaagtttgtgtcgact |
43433428 |
T |
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| Q |
202 |
ctgaatactacttttactagaccttgaaacacggccaataaatgcgcagacacaccgccgatcacccaaaattgttcatctctc |
285 |
Q |
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| T |
43433429 |
ctgaatactacttttactagaccttgaaacacggccaataaatgtgcagacacaccaccgatcacccaaaattgttcatttctc |
43433512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 278
Target Start/End: Original strand, 13822627 - 13822903
Alignment:
| Q |
2 |
aaagtttaccaaagatcggaacagatgatcggtaaccagaattcacagcatatgatacaccagcaacaactcctatcaagttaaatatgaaaagtgtcgt |
101 |
Q |
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| T |
13822627 |
aaagtttaccaaagagtggaccccatgattggtaaccactattgatagcataagatataccagcaacaactcctaccaagtttattataagaagcgttgt |
13822726 |
T |
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| Q |
102 |
tggaggaaccagaagaaatgtccatttgatcttgtacagttctgcagagtctccgttttcatctgatgcttttgaggtcactgtgaagtttgtgtcgact |
201 |
Q |
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| T |
13822727 |
tggaggaatgagaagtgttgtccatttaatcatgtaaagttctgcggagtctccgtcttcatctgatgctttggaggtgacggtgaagtttgtgtcgatt |
13822826 |
T |
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| Q |
202 |
ctgaatactacttttactagaccttgaaacacggccaataaatgcgcagacacaccgccgatcacccaaaattgttc |
278 |
Q |
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| T |
13822827 |
ccagcaagtacttttagtagaccttggaacacggcgaaaagatgtgctgacacaccaccgataacccaaaactgttc |
13822903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 285
Target Start/End: Complemental strand, 16735491 - 16735254
Alignment:
| Q |
48 |
agcatatgatacaccagcaacaactcctatcaagttaaatatgaaaagtgtcgttggaggaaccagaagaaatgtccatttgatcttgtacagttctgca |
147 |
Q |
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| T |
16735491 |
agcataagatataccagcaacaacttctaccaagtttattatgagaagcgttgttggaggaatgagaagtgttgtctatttgaacatgtagagttaggtg |
16735392 |
T |
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| Q |
148 |
gagtctccgttttcatctgatgcttttgaggtcactgtgaagtttgtgtcgactctgaatactacttttactagaccttgaaacacggccaataaatgcg |
247 |
Q |
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| T |
16735391 |
gagtctccgtcttcatctgatgctttggaagtgacagtgaagtttgtgtcgattctcgcaagtacttttagtagaccttgaaacacggcaaaaagatgcg |
16735292 |
T |
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| Q |
248 |
cagacacaccgccgatcacccaaaattgttcatctctc |
285 |
Q |
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| T |
16735291 |
ctgacacacccccaatgacccaaaattgttcatttctc |
16735254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 65052 - 64894
Alignment:
| Q |
120 |
tgtccatttgatcttgtacagttctgcagagtctccgttttcatctgatgcttttgaggtcactgtgaagtttgtgtcgactctgaatactacttttact |
219 |
Q |
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||||||||||| | ||| |||||||||||| |||||||||||||||||||||| |||| | || ||||||||||||| |||||| |||||||||| |
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| T |
65052 |
tgtccatttgaacaagtagagttctgcagagcctccgttttcatctgatgctttcaaggtgaaggtaaagtttgtgtcgattctgaaaactacttttagc |
64953 |
T |
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| Q |
220 |
agaccttgaaacacggccaataaatgcgcagacacaccgccgatcacccaaaattgttc |
278 |
Q |
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| T |
64952 |
tggtcttggaacacggcaaaaaggtgcgctaacacaccatcgatcacccaaaactgttc |
64894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 227
Target Start/End: Original strand, 65493 - 65659
Alignment:
| Q |
63 |
agcaacaactcctatcaagttaaatatgaaaagtgtcgttggaggaa--ccagaagaaatgtccatttgatcttgtacagttctgcagagtctccgtttt |
160 |
Q |
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| T |
65493 |
agcaacaactcctaccaagtttattatgagaagtgtcgttggaggaatgaaagaagtgttgtccatttgaacatgtagcgttatgtagagcctccttttt |
65592 |
T |
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| Q |
161 |
catctgatgcttttgaggtcactgtgaagtttgtgtcgactctgaatactacttttactagaccttg |
227 |
Q |
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| T |
65593 |
cgtctgacgctttcaaggtgacggtcgagtttttgtcgattctaaaaactacgtttagtagaccttg |
65659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 9482512 - 9482435
Alignment:
| Q |
120 |
tgtccatttgatcttgtacagttctgcagagtctccgttttcatctgatgcttttgaggtcactgtgaagtttgtgtc |
197 |
Q |
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| T |
9482512 |
tgtccatttaaacatgtatagttctgcagagtctccatcttcatctgaagcttttgaggtaacagtgaagtttgtgtc |
9482435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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