View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17765_low_12 (Length: 258)
Name: NF17765_low_12
Description: NF17765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17765_low_12 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0049 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 43433029 - 43433268
Alignment:
| Q |
19 |
gttctagcatccaattccacacttctcagctttaggaccaatgacttttgtggtaaacggatcaagacgaacccataacacagataaaacagttgcaagc |
118 |
Q |
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| T |
43433029 |
gttctagcatccaattccacacttctcagctttaggaccaatgactcttgtggtaaacggatcaagacgaacccataacacagataaaacagttgcaagc |
43433128 |
T |
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| Q |
119 |
atgatcgaccagaacacaacaatggttggtattcgattcttgcgtcccataagacctttaaggaaagggaagagatgaatgattacccaaaacgcaaaga |
218 |
Q |
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| T |
43433129 |
atgatcgaccagaacacaacaatggttggtattcgattcttgcgtcccataagacctttaaggaaagggaagagatgaatgattacccaaaacgcaaaga |
43433228 |
T |
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| Q |
219 |
aaagtttaccaaagatcggaccagatgatcggtaaccagc |
258 |
Q |
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| T |
43433229 |
aaagtttaccaaagatcggaccagatgatcggtaaccagc |
43433268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 13822439 - 13822664
Alignment:
| Q |
31 |
aattccacacttctcagctttaggaccaatgacttttgtggtaaacggatcaagacgaacccataacacagataaaacagttgcaagcatgatcgaccag |
130 |
Q |
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| T |
13822439 |
aattccacactcctcagctttaggaccagtgactcttgtagtaaacggatcaactcgaacccataatagagagaaaatggatgcaagaagaatcgaccag |
13822538 |
T |
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| Q |
131 |
aacacaacaatggttggtattcgattcttgcgtcccataagacctttaaggaaagggaagagatgaatgattacccaaaacgcaaagaaaagtttaccaa |
230 |
Q |
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| T |
13822539 |
accacaacaatggttggcgttcgattctggcgtcccataagacctttaaggaaagggtagagatgaacgataacccaaaatgcaaagaaaagtttaccaa |
13822638 |
T |
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| Q |
231 |
agatcggaccagatgatcggtaacca |
256 |
Q |
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| T |
13822639 |
agagtggaccccatgattggtaacca |
13822664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 9482709 - 9482616
Alignment:
| Q |
140 |
atggttggtattcgattcttgcgtcccataagacctttaaggaaagggaagagatgaatgattacccaaaacgcaaagaaaagtttaccaaaga |
233 |
Q |
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| T |
9482709 |
atggttggcgttcggttctggcgtcccataagacctttaaggaaggggtagagatggatgatcacccaaaatgcaaagaaaagtttaccaaaga |
9482616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 65218 - 65156
Alignment:
| Q |
171 |
gacctttaaggaaagggaagagatgaatgattacccaaaacgcaaagaaaagtttaccaaaga |
233 |
Q |
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| T |
65218 |
gacctttaaggaaagggtagagacgaatgatgacccaaaatacaaagaagagtttaccaaaga |
65156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 65379 - 65444
Alignment:
| Q |
165 |
ccataagacctttaaggaaagggaagagatgaatgattacccaaaacgcaaagaaaagtttaccaaa |
231 |
Q |
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| T |
65379 |
ccataagacctttaaggaaaggta-gcgatgaatgataacccaaaatgcaaagcaaagtttaccaaa |
65444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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