View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17765_low_19 (Length: 244)
Name: NF17765_low_19
Description: NF17765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17765_low_19 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 91 - 244
Target Start/End: Original strand, 47649908 - 47650061
Alignment:
| Q |
91 |
ggatgtcatacatgaacttccttagaagcatcatttatccatctccattgctgtttgtgcgagtcattctccataaatccttatagttgggctccttttt |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47649908 |
ggatgtcatacatgaacttccttagaagcatcatttatccatctccattgctgtttgtgcgagtcattctccataaatccttatagttgggctccttttt |
47650007 |
T |
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| Q |
191 |
ggtttcaggatctctctaaaagcaaattttcatcatcacaaaatataaatacat |
244 |
Q |
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| T |
47650008 |
ggtttcaggatctctctaaaagcaaattttcatcatcacaaaatataaatacat |
47650061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 91 - 244
Target Start/End: Complemental strand, 170916 - 170762
Alignment:
| Q |
91 |
ggatgtcatacatgaacttccttagaagcatcatttatccat-ctccattgctgtttgtgcgagtcattctccataaatccttatagttgggctcctttt |
189 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| |
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| T |
170916 |
ggatgccatacatgaacttccttagaagcatcatttatccattctccattgctgtttgtgtgagtcattctccataaatccttatagttagcctcctttt |
170817 |
T |
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| Q |
190 |
tggtttcaggatctctctaaaagcaaattttcatcatcacaaaatataaatacat |
244 |
Q |
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| T |
170816 |
tggtttcgggatctctctaaaagcaaattttcatcattgcaaaatataaatacat |
170762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 91 - 244
Target Start/End: Original strand, 92066 - 92220
Alignment:
| Q |
91 |
ggatgtcatacatgaacttccttagaagcatcatttatccat-ctccattgctgtttgtgcgagtcattctccataaatccttatagttgggctcctttt |
189 |
Q |
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|||||||||||||||| | |||||||||||||||||||||| |||| ||| ||||| || ||||||||||||||||||||||||||||| ||||||||| |
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| T |
92066 |
ggatgtcatacatgaatattcttagaagcatcatttatccattctccgttgttgtttatgtgagtcattctccataaatccttatagttgtgctcctttt |
92165 |
T |
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| Q |
190 |
tggtttcaggatctctctaaaagcaaattttcatcatcacaaaatataaatacat |
244 |
Q |
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| T |
92166 |
cagtttcaagatctctctaaaagcaaattttcatcgtcacaaaatataaatacat |
92220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 30754076 - 30754116
Alignment:
| Q |
92 |
gatgtcatacatgaacttccttagaagcatcatttatccat |
132 |
Q |
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| T |
30754076 |
gatgtcatacatgaacttccttagaagcgtcatttatccat |
30754116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 30754153 - 30754190
Alignment:
| Q |
201 |
tctctctaaaagcaaattttcatcatcacaaaatataa |
238 |
Q |
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| T |
30754153 |
tctctctaaaagcatattttcatcatcacaaaatataa |
30754190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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