View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17765_low_2 (Length: 579)
Name: NF17765_low_2
Description: NF17765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17765_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 12 - 561
Target Start/End: Complemental strand, 39998427 - 39997877
Alignment:
| Q |
12 |
gagatgaatatgaccatgaaaaaagacaatctcagccagc----atggtgtcttcaaaagaagacaggatgcaacttgcataggatccaaattgctatat |
107 |
Q |
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| T |
39998427 |
gagatgaatatgaccatgaaaaaagacaatctcagccagccagcatggtgtcttcaaaagaagacaggatgcaacttacataggattcaaattgctatat |
39998328 |
T |
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| Q |
108 |
aggacaaaatggtattagtaatagttttggtaaaccaatgaaactgtaatatccaacaaatcattcttcacatcctttaatcacgccaatcacataaaaa |
207 |
Q |
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| T |
39998327 |
aggacaaaatgata---gtaatagttttggtaaaccaatgaaactgtaatatccaacaaatcattcttcacatcctttaatcacgccaatcacataaaaa |
39998231 |
T |
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| Q |
208 |
ggacccatggttattggaaatacaaaagatgattaatggtaaaacaaaaggaacatcattgctataagccaatcaaaataatctctacttattacttaca |
307 |
Q |
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| T |
39998230 |
ggacccatggttattggaaatacaaaagatgattaatggtaaaacaaaaggaacatcattgctataagccaatcaaaataatctctacttattacttaca |
39998131 |
T |
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| Q |
308 |
aggaaattgagggccctcctaagcaaaatttactttaagcaatggccttcaaaagattcgatttccactgtccaagtgtctctcttggattcctggaaat |
407 |
Q |
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| T |
39998130 |
aggaaattgagggccctcctaagcaaaatttactttaagcaatggccttcaaaagattcgatttccactgtccaagtgtctctcttggattcctggaaat |
39998031 |
T |
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| Q |
408 |
tggtcattctctttagtacatgatactcctttctaaagtaattgatttgctatgtgcattattaagatgacactagaaaaatggtagtatataagatgtt |
507 |
Q |
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| T |
39998030 |
tggtcattctctttagtacatgatactcctttctaaagtaattgatttgctatgtgcattattaagatgacactagaaaaatggtagtatataagatgtt |
39997931 |
T |
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| Q |
508 |
gttaaattcatctcattgcgtctttttgtacatttgattacccctccataaggt |
561 |
Q |
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| T |
39997930 |
gttaaattcatctcattgcgtctttttgtacattggattacccctccataaggt |
39997877 |
T |
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