View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17765_low_20 (Length: 243)

Name: NF17765_low_20
Description: NF17765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17765_low_20
NF17765_low_20
[»] chr6 (20 HSPs)
chr6 (1-224)||(5429731-5429954)
chr6 (3-74)||(5139448-5139519)
chr6 (3-74)||(5422337-5422408)
chr6 (1-79)||(5358028-5358106)
chr6 (2-81)||(5149594-5149673)
chr6 (1-56)||(5077000-5077055)
chr6 (2-69)||(5366639-5366706)
chr6 (106-148)||(5174371-5174413)
chr6 (106-172)||(5276186-5276252)
chr6 (106-172)||(5380597-5380663)
chr6 (182-224)||(9372977-9373019)
chr6 (180-209)||(211616-211645)
chr6 (180-225)||(4606018-4606063)
chr6 (111-172)||(5184666-5184727)
chr6 (106-175)||(5692730-5692799)
chr6 (182-227)||(33858287-33858332)
chr6 (18-66)||(5174292-5174340)
chr6 (18-66)||(5276038-5276086)
chr6 (123-171)||(5394589-5394637)
chr6 (18-66)||(5692830-5692878)
[»] chr4 (3 HSPs)
chr4 (180-227)||(44917476-44917523)
chr4 (184-225)||(26488248-26488289)
chr4 (111-171)||(4350449-4350509)
[»] chr3 (8 HSPs)
chr3 (180-227)||(31311348-31311395)
chr3 (180-227)||(37169646-37169693)
chr3 (181-227)||(23551108-23551154)
chr3 (182-227)||(4229320-4229365)
chr3 (180-225)||(38472198-38472243)
chr3 (181-225)||(16202381-16202425)
chr3 (180-224)||(42628773-42628817)
chr3 (177-225)||(46888222-46888270)
[»] chr8 (3 HSPs)
chr8 (180-225)||(9135309-9135354)
chr8 (176-225)||(42641376-42641425)
chr8 (180-225)||(42788105-42788150)
[»] chr7 (7 HSPs)
chr7 (180-225)||(736429-736474)
chr7 (180-225)||(1702914-1702959)
chr7 (180-225)||(21973973-21974018)
chr7 (180-225)||(30256077-30256122)
chr7 (182-227)||(36309281-36309326)
chr7 (181-225)||(9327917-9327961)
chr7 (181-225)||(24406942-24406986)
[»] chr5 (3 HSPs)
chr5 (180-225)||(12444237-12444282)
chr5 (180-225)||(13407941-13407986)
chr5 (188-224)||(28442671-28442707)
[»] chr2 (3 HSPs)
chr2 (182-227)||(12612132-12612177)
chr2 (182-227)||(41245621-41245666)
chr2 (183-227)||(27251607-27251651)
[»] chr1 (3 HSPs)
chr1 (180-225)||(28868007-28868052)
chr1 (180-225)||(46939666-46939711)
chr1 (181-225)||(12300795-12300839)
[»] scaffold0217 (1 HSPs)
scaffold0217 (185-225)||(1410-1450)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5429731 - 5429954
Alignment:
Q  1 gtgtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaataagatttcaaaggtggagaaggacgaagacga 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5429731 gtgtagatccatctcaagtacgacatcaaatcggtgactttggaaaagcctttcaaagtctcttgaataagatttcaaaggtggagaaggacgaagacga 5429830  T
Q  101 ttcattgaaatggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggtagttaaacttagggttaaatatatttttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5429831 ttcattgaaatggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggtaattaaacttagggttaaatatatttttt 5429930  T
Q  201 gtccctacaaacatacaaactttt 224  Q
    ||||||||||||||||||||||||    
T  5429931 gtccctacaaacatacaaactttt 5429954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 5139519 - 5139448
Alignment:
Q  3 gtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaataagatt 74  Q
    |||||||||||| ||||||| |||||||||||||| || |||||||| ||||||| ||| || |||||||||    
T  5139519 gtagatccatctgaagtacgtcatcaaaccggtgaattcggaaaagcttttcaaaatcttttaaataagatt 5139448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 5422337 - 5422408
Alignment:
Q  3 gtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaataagatt 74  Q
    |||||||||||  ||||||| | |||||||||||| ||||||||||| ||||||| ||| ||||||||||||    
T  5422337 gtagatccatccgaagtacgtcgtcaaaccggtgaatttggaaaagcatttcaaaatcttttgaataagatt 5422408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 5358106 - 5358028
Alignment:
Q  1 gtgtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaataagatttcaaa 79  Q
    |||||||||||||| |||||||  ||||||| ||||| || |||||||| ||||||||||| ||||| | |||||||||    
T  5358106 gtgtagatccatctgaagtacgtaatcaaactggtgagttcggaaaagcatttcaaagtctattgaaaaggatttcaaa 5358028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 5149673 - 5149594
Alignment:
Q  2 tgtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaataagatttcaaagg 81  Q
    ||||||||||| | ||||||| || |||||  |||| ||||| ||||| |||||||||||||||||||  ||||||||||    
T  5149673 tgtagatccatgtgaagtacgtcaccaaacaagtgagtttggcaaagcatttcaaagtctcttgaatagaatttcaaagg 5149594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5077055 - 5077000
Alignment:
Q  1 gtgtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaa 56  Q
    |||||||||||||| ||||||| |||||||| ||||| ||||||||| | ||||||    
T  5077055 gtgtagatccatctgaagtacgtcatcaaactggtgaatttggaaaatcgtttcaa 5077000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 5366639 - 5366706
Alignment:
Q  2 tgtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaata 69  Q
    ||||||||||||  |||| || |||||||||||||| || |||||||| ||||||| ||| |||||||    
T  5366639 tgtagatccatcggaagtccgtcatcaaaccggtgaattcggaaaagcatttcaaattcttttgaata 5366706  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 5174371 - 5174413
Alignment:
Q  106 tgaaatggagagacgcacttcgtgaggcagctgaccttgctgg 148  Q
    ||||||||||||| |||||||||||||| ||||| ||||||||    
T  5174371 tgaaatggagagatgcacttcgtgaggctgctgagcttgctgg 5174413  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 5276186 - 5276252
Alignment:
Q  106 tgaaatggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggta 172  Q
    ||||||||||||| |||||||||||||  |||||  ||||||| |||||||||  ||||| ||||||    
T  5276186 tgaaatggagagatgcacttcgtgaggttgctgagattgctggctttgtagttccaaatttcaggta 5276252  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 5380597 - 5380663
Alignment:
Q  106 tgaaatggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggta 172  Q
    ||||||||||||| || |||| || ||| |||| | ||||||||||||||||| |||| ||||||||    
T  5380597 tgaaatggagagaggctcttcatggggctgctgcctttgctggatttgtagttctaaactccaggta 5380663  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 9372977 - 9373019
Alignment:
Q  182 agggttaaatatattttttgtccctacaaacatacaaactttt 224  Q
    |||||||||||||||||| ||||||||||| |||| |||||||    
T  9372977 agggttaaatatatttttagtccctacaaatataccaactttt 9373019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 209
Target Start/End: Complemental strand, 211645 - 211616
Alignment:
Q  180 ttagggttaaatatattttttgtccctaca 209  Q
    ||||||||||||||||||||||||||||||    
T  211645 ttagggttaaatatattttttgtccctaca 211616  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 4606063 - 4606018
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    |||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  4606063 ttagggttaaatatgtttttggtccctataaatatacaaacttttc 4606018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 5184727 - 5184666
Alignment:
Q  111 tggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggta 172  Q
    |||||||| || ||||||||||| |||| |||||| ||||||  |||| |||||||||||||    
T  5184727 tggagagaggctcttcgtgaggccgctggccttgcaggatttacagttctaaattccaggta 5184666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 5692799 - 5692730
Alignment:
Q  106 tgaaatggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggtagtt 175  Q
    |||||||||||||||| ||| ||||||  ||||  |||||||| |||||||||  ||||| |||||||||    
T  5692799 tgaaatggagagacgcgcttagtgaggttgctgggcttgctggctttgtagttccaaatttcaggtagtt 5692730  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 33858287 - 33858332
Alignment:
Q  182 agggttaaatatattttttgtccctacaaacatacaaacttttcat 227  Q
    |||||||||||||||||| ||||||| ||| |||| ||||||||||    
T  33858287 agggttaaatatatttttggtccctataaatataccaacttttcat 33858332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 5174292 - 5174340
Alignment:
Q  18 gtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttga 66  Q
    |||||||| ||||| ||||| ||||||||||| || |||||||||||||    
T  5174292 gtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttga 5174340  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 5276038 - 5276086
Alignment:
Q  18 gtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttga 66  Q
    |||||||| ||||| ||||| ||||||||||| || |||||||||||||    
T  5276038 gtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttga 5276086  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 5394589 - 5394637
Alignment:
Q  123 cttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggt 171  Q
    ||||||| |||||| | |||||| ||||||||||||||||||| |||||    
T  5394589 cttcgtgtggcagcaggccttgcaggatttgtagttttaaatttcaggt 5394637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 5692878 - 5692830
Alignment:
Q  18 gtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttga 66  Q
    |||||||| ||||| ||||| ||||||||||| || |||||||||||||    
T  5692878 gtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttga 5692830  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 44917476 - 44917523
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttcat 227  Q
    |||||||||||||| ||||||||||||| ||| |||| ||||||||||    
T  44917476 ttagggttaaatatgttttttgtccctataaatataccaacttttcat 44917523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 26488289 - 26488248
Alignment:
Q  184 ggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    |||||||||| ||||| ||||||||||| |||||||||||||    
T  26488289 ggttaaatatgtttttggtccctacaaatatacaaacttttc 26488248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 4350449 - 4350509
Alignment:
Q  111 tggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggt 171  Q
    |||||||||||||||||||| || |||| |||||| |||||||| ||  | ||||||||||    
T  4350449 tggagagacgcacttcgtgatgctgctggccttgcaggatttgttgtcctgaattccaggt 4350509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 31311395 - 31311348
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttcat 227  Q
    |||||||||||||| ||||| ||||||| ||| |||||||||||||||    
T  31311395 ttagggttaaatatgtttttggtccctataaatatacaaacttttcat 31311348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 37169646 - 37169693
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttcat 227  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||||    
T  37169646 ttagggttaaatatatttttggtccctataaatataccaacttttcat 37169693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 23551154 - 23551108
Alignment:
Q  181 tagggttaaatatattttttgtccctacaaacatacaaacttttcat 227  Q
    ||||||||||||||||||| ||||||| ||| |||| ||||||||||    
T  23551154 tagggttaaatatatttttggtccctataaatataccaacttttcat 23551108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 4229320 - 4229365
Alignment:
Q  182 agggttaaatatattttttgtccctacaaacatacaaacttttcat 227  Q
    |||||||||||| ||||| ||||||| ||| |||||||||||||||    
T  4229320 agggttaaatatgtttttggtccctataaatatacaaacttttcat 4229365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 38472198 - 38472243
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  38472198 ttagggttaaatatatttttagtccctataaatatactaacttttc 38472243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 16202381 - 16202425
Alignment:
Q  181 tagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    ||||||||||||| ||||||||||||| ||| |||| ||||||||    
T  16202381 tagggttaaatatgttttttgtccctataaaaataccaacttttc 16202425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 42628773 - 42628817
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaactttt 224  Q
    |||||||||||||||||||| ||||||| ||| |||| |||||||    
T  42628773 ttagggttaaatatatttttggtccctataaatataccaactttt 42628817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 46888270 - 46888222
Alignment:
Q  177 aacttagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    ||||||||||||||||| ||||||||||||| ||| |||  ||||||||    
T  46888270 aacttagggttaaatatgttttttgtccctataaatatatcaacttttc 46888222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 9135309 - 9135354
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  9135309 ttagggttaaatatatttttagtccctataaatataccaacttttc 9135354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 42641425 - 42641376
Alignment:
Q  176 aaacttagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    |||||||||||||||||| ||||| ||||||| ||| |||| ||||||||    
T  42641425 aaacttagggttaaatatgtttttggtccctataaatatactaacttttc 42641376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 42788150 - 42788105
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    |||||||||||||||||||| ||||||| ||| ||| |||||||||    
T  42788150 ttagggttaaatatatttttagtccctataaatatataaacttttc 42788105  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 736474 - 736429
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    ||||||||||||||||||||| |||||| ||| |||| ||||||||    
T  736474 ttagggttaaatatattttttctccctataaatataccaacttttc 736429  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 1702959 - 1702914
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  1702959 ttagggttaaatatatttttggtccctataaatataccaacttttc 1702914  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 21974018 - 21973973
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  21974018 ttagggttaaatatatttttggtccctataaatatactaacttttc 21973973  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 30256122 - 30256077
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    |||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  30256122 ttagggttaaatatgtttttggtccctataaatatacaaacttttc 30256077  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 36309326 - 36309281
Alignment:
Q  182 agggttaaatatattttttgtccctacaaacatacaaacttttcat 227  Q
    |||||||||||| ||||| ||||||| ||| |||||||||||||||    
T  36309326 agggttaaatatttttttggtccctataaatatacaaacttttcat 36309281  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 9327917 - 9327961
Alignment:
Q  181 tagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    ||||||||||||| ||||||||||||| ||| |||| ||||||||    
T  9327917 tagggttaaatatgttttttgtccctataaatataccaacttttc 9327961  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 24406986 - 24406942
Alignment:
Q  181 tagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    ||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  24406986 tagggttaaatatgtttttggtccctataaatatacaaacttttc 24406942  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 12444237 - 12444282
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  12444237 ttagggttaaatatatttttggtccctataaatataccaacttttc 12444282  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 13407941 - 13407986
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  13407941 ttagggttaaatatatttttggtccctataaatataccaacttttc 13407986  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 28442707 - 28442671
Alignment:
Q  188 aaatatattttttgtccctacaaacatacaaactttt 224  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  28442707 aaatatattttttgtccttacaaatatacaaactttt 28442671  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 12612177 - 12612132
Alignment:
Q  182 agggttaaatatattttttgtccctacaaacatacaaacttttcat 227  Q
    |||||||||||||||||| ||||||| ||| |||| ||||||||||    
T  12612177 agggttaaatatatttttggtccctataaatataccaacttttcat 12612132  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 41245621 - 41245666
Alignment:
Q  182 agggttaaatatattttttgtccctacaaacatacaaacttttcat 227  Q
    |||||||||||| ||||||||||||| ||| |||| ||||||||||    
T  41245621 agggttaaatatgttttttgtccctataaatataccaacttttcat 41245666  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 27251607 - 27251651
Alignment:
Q  183 gggttaaatatattttttgtccctacaaacatacaaacttttcat 227  Q
    ||||||||||| ||||| ||||||||||| |||| ||||||||||    
T  27251607 gggttaaatatgtttttggtccctacaaatatacgaacttttcat 27251651  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 28868007 - 28868052
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    |||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  28868007 ttagggttaaatatgtttttggtccctataaatatacaaacttttc 28868052  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 46939711 - 46939666
Alignment:
Q  180 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  46939711 ttagggttaaatatatttttggtccctataaatataccaacttttc 46939666  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 12300839 - 12300795
Alignment:
Q  181 tagggttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    ||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  12300839 tagggttaaatatatttttggtccctataaatatactaacttttc 12300795  T

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Target: scaffold0217 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 1450 - 1410
Alignment:
Q  185 gttaaatatattttttgtccctacaaacatacaaacttttc 225  Q
    ||||||||| ||||||||||||||||| |||| ||||||||    
T  1450 gttaaatatgttttttgtccctacaaatataccaacttttc 1410  T

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