View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17765_low_3 (Length: 568)
Name: NF17765_low_3
Description: NF17765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17765_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 9234039 - 9234302
Alignment:
| Q |
17 |
aggaagaggctgcagcagtagtggaggagcctgtagcaaccattgaaaatgagtcagaagcaccagcagcagtaactgctgaggaagagaatgttaaacc |
116 |
Q |
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| T |
9234039 |
aggaagaggctgcagcagtagtggaggagcctgtagcaaccattgaaaatgagtcagaagcaccagcagcagtaactgctgaggaagagaatgttaaacc |
9234138 |
T |
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| Q |
117 |
agttgagtcagtggaagctccagcagcagaagaagttccagttgagaaatctgaagcttaaaacaatggagggtgtgtgaatggaattgatgaaaaagag |
216 |
Q |
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| T |
9234139 |
agttgagtcagtggaagctccagcagcagaagaagttccagttgagaaatctgaagcttaaaacaatggagggtgtgtgaatggaattgatgaaaaagag |
9234238 |
T |
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| Q |
217 |
agattaaattaatggttctagttgttgggatcgggtctaccattttgcatgtcgaagttgaaaa |
280 |
Q |
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| T |
9234239 |
agattaaattaatggttctagttgttgggatcgggtctaccattttgcatgtcgaggttgaaaa |
9234302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 341 - 551
Target Start/End: Original strand, 9234363 - 9234573
Alignment:
| Q |
341 |
agtaagtctttggaaatggttattcatatggagggtatagctatctacatcagttatgtatggaactttgctccatgtcagcatatatatacatgttgaa |
440 |
Q |
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| T |
9234363 |
agtaagtctttggaaatggttattcatatggagggtatagctatctacatcagttatgtatggaactttactccatgtcagcatatatatacatgctgaa |
9234462 |
T |
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| Q |
441 |
tggtggacatctgatgtgaaatttcattccatgagttgtgtattgaagtgatcagctataaggtgctatggttcttgggaaggttacatgagtttttcat |
540 |
Q |
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| T |
9234463 |
tggtggacatgtgatgtgaaatttcattccatgagttgtgtattgaagtgatcagctataaggtgctatggttcttgggaaggttacatgagtttttcat |
9234562 |
T |
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| Q |
541 |
ggtgtgttcct |
551 |
Q |
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| T |
9234563 |
ggtgtgttcct |
9234573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 548
Target Start/End: Original strand, 9245933 - 9246010
Alignment:
| Q |
471 |
atgagttgtgtattgaagtgatcagctataaggtgctatggttcttgggaaggttacatgagtttttcatggtgtgtt |
548 |
Q |
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| T |
9245933 |
atgagtcgtgtattgaagtcatcaactataaggtgatatggttcttgggaaggttccatgactttgtcgtagtgtgtt |
9246010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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