View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17765_low_5 (Length: 484)
Name: NF17765_low_5
Description: NF17765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17765_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 276 - 469
Target Start/End: Complemental strand, 40722326 - 40722133
Alignment:
| Q |
276 |
gagaaatgcttattcctacgaaagtagtttctaagaattccacgaatgacgtgtgtatcctatgtggagaaaactgcataagtcaacaataccaccatct |
375 |
Q |
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| T |
40722326 |
gagaaatgtttattcctacgaaagtagtttctaagaattccacaaatgacgtgtgtatcctatgtggagaaaactgcataagtcaacaataccaccatct |
40722227 |
T |
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| Q |
376 |
ctctcgtttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctagccgtctttttcccatgcttttctatagctcttac |
469 |
Q |
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| T |
40722226 |
ctctcgtttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctagctgtctttttcccatgcttttctatagctcttac |
40722133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 277 - 469
Target Start/End: Complemental strand, 16003978 - 16003789
Alignment:
| Q |
277 |
agaaatgcttattcctacgaaagtagtttctaagaattccacgaatgacgtgtgtatcctatgtggagaaaactgcataagtcaacaataccaccatctc |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||| |
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| T |
16003978 |
agaaatgcttattcctacgaaagtagtttctaagaattccacgaatgacgtgtgtatcctatgtggagaaaattacataagtcaacaatacca---tctc |
16003882 |
T |
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| Q |
377 |
tctcgtttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctagccgtctttttcccatgcttttctatagctcttac |
469 |
Q |
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| T |
16003881 |
tctcatttatgacacacggttaccaaacgtaaacaccctcttcttcttttattctctagctgtctttttcccatgcttttctatagctcttac |
16003789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 276 - 469
Target Start/End: Complemental strand, 26795361 - 26795169
Alignment:
| Q |
276 |
gagaaatgcttattcctacgaaagtagtttctaagaattccacgaatgacgtgtgtatcctatgtggagaaaactgcataagtcaacaataccaccatct |
375 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| |
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| T |
26795361 |
gagaaatgcttattcctacgaaa-tagtttctaagaattccacgaatgacgtgtgtatcctatgtggagaaaatttcataagtcaacaat---accatct |
26795266 |
T |
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| Q |
376 |
ctctcgtttatgacacacggttaccaaacgtaaacaccc---tcttcttcttttgttctctagccgtctttttcccatgcttttctatagctcttac |
469 |
Q |
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| T |
26795265 |
ctctcatttatgacacacggttaccaaacgtaaacaccctcttcttcttcttttgttctctagctgtctttttcccatgcttttctacagctgttac |
26795169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 41439728 - 41439588
Alignment:
| Q |
18 |
aatatatataaattacaaactgtaatctttacgaaattttttaatgacaccaattatataa---nnnnnnnnaaaataaatttgtttaaagg----atat |
110 |
Q |
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| T |
41439728 |
aatatatataaattacaaactgtaatctttaagaaattttttaatgacgccaattatataatatttttttttaaaataaatttgtttaaaggatatatat |
41439629 |
T |
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| Q |
111 |
aattgattgaacaaatttgtttaaagggtataattgaaaat |
151 |
Q |
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| T |
41439628 |
aattgattgaacaaatttgtttaaagggtataatcgaaaat |
41439588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 41439533 - 41439420
Alignment:
| Q |
163 |
attgttttccaccgtcagatctttcctttatatgaagtgcatgtgtgggaatnnnnnnnnn-gtttaagaggtcatggtcatgttatttttacatggtcg |
261 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
41439533 |
attgttttccaccgtcagatcttccctttatatgaagtgcatgtgtgggaagaaaacaaaaagtttaagaggtgatggtcatgttatttttacatggtcg |
41439434 |
T |
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| Q |
262 |
tgaatttgttggat |
275 |
Q |
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| T |
41439433 |
tgaatttgttggat |
41439420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 279 - 469
Target Start/End: Original strand, 27221778 - 27221949
Alignment:
| Q |
279 |
aaatgcttattcctacgaaagtagtttctaagaattccacgaatgacgtgtgtatcctatgtggagaaaactgcataagtcaacaataccaccatctctc |
378 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |
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| T |
27221778 |
aaatgctcattcctacgaaa-tagtttctaagaattccacgaatgacgtgtgtatcctacgtggataaaactgtataagtcaaca--------------- |
27221861 |
T |
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| Q |
379 |
tcgtttatgacacacggttaccaaacgtaaacaccctcttcttcttttgttctctagccgtctttttcccatgcttttctatagctcttac |
469 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
27221862 |
---tttatgacacacggttaccaaacgtaaacaacctcttcttcttttgttctctagctgtctttttcccatgcttttctgcagctcttac |
27221949 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 2972054 - 2972096
Alignment:
| Q |
165 |
tgttttccaccgtcagatctttcctttatatgaagtgcatgtg |
207 |
Q |
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| T |
2972054 |
tgttttccaccgtcagatcttcccactatatgaagtgcatgtg |
2972096 |
T |
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