View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17765_low_7 (Length: 464)
Name: NF17765_low_7
Description: NF17765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17765_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Complemental strand, 9871610 - 9871180
Alignment:
| Q |
19 |
tttgttacatttgtttcaaatttaacaattacaaaatccataatcagtttttcggtttcctctttggtgcggttgcatggttaaggaacttgataattgg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9871610 |
tttgttacatttgtttcaaatttaacaattacaaaatccataatcagtttttcggtttcctctttggtgcggttgcatggttaaggaacttgataattgg |
9871511 |
T |
|
| Q |
119 |
agacaatgctccatttagagtaatccaaagcactcttgaattacttgggtatgtgccttaatatattcataaaaaccaaataatccaaagtctctacttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9871510 |
agacaatgctccatttagagtaatccaaagcactcttgaattacttgggtatgtgccttaatttattcataaaaaccaaataatccaaagtctctacttc |
9871411 |
T |
|
| Q |
219 |
ttttctaacaacataattatttgtttaaacttaattctttgcagaaatggaacaattccttgcatcacacttttgcttggtggtaacctcactgcaggct |
318 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9871410 |
ttttctaaccacataattatttgtttaaacttaattctttgcagaaatggaacaattccttgcatcacacttttgcttggtggtaacctcactgcaggct |
9871311 |
T |
|
| Q |
319 |
tgaaatcatcaagtgtaaaaccattgacactcatctgcatcatcataactcggcttttcgtactgcctgttattggattatttattgtgaaagccgcggc |
418 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9871310 |
tgaaatcatcaagtgtaaaaccattgactctcatctgcatcatcataactcggcttttcgtactgcctgttattggattatttattgtgaaagctgcggc |
9871211 |
T |
|
| Q |
419 |
taattacggctttctcccagtggatcctttg |
449 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
9871210 |
taattacggctttctcccagtggatcctttg |
9871180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 449
Target Start/End: Complemental strand, 9897245 - 9896813
Alignment:
| Q |
19 |
tttgttacatttgtttcaaatttaacaattacaaaatccataatcagtttttcggtttcctctttggtgcggttgcatggttaaggaacttgataattgg |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | ||||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| |
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| T |
9897245 |
tttgttacatttgtttcaaatttaacatttacttattccatgatcagtttttcggtttcctctttggagcggttgcatggttaaggaagttaataattgg |
9897146 |
T |
|
| Q |
119 |
agacaatgctccatttagagtaatccaaagcactcttgaattacttgggtatgtgccttaatatattcataaaaaccaaataatcc--aaagtctctact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| |||||| ||| |||||||||||| |
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| T |
9897145 |
agacaatgctccatttagagtaatccaaagcactcttgaattacttgggtatctgccttaatttcttcataaaaatcaaatagtccgtaaagtctctact |
9897046 |
T |
|
| Q |
217 |
tcttttctaacaacataattatttgtttaaacttaattctttgcagaaatggaacaattccttgcatcacacttttgcttggtggtaacctcactgcagg |
316 |
Q |
| |
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|||||| |||| ||| |||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
9897045 |
tcttttttaaccacacaattatgtgtttaaacttaattctttgcaggaacggaacaattccttgcatcacgcttttgcttggtggtaacctcacggcagg |
9896946 |
T |
|
| Q |
317 |
cttgaaatcatcaagtgtaaaaccattgacactcatctgcatcatcataactcggcttttcgtactgcctgttattggattatttattgtgaaagccgcg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||| |||||||||||||||||| |
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| T |
9896945 |
cttgaaatcatcaagtgtaaaaccattgacactcatctgcatcatcataacccggcttttcctgctacctgttattggattgtttattgtgaaagccgcg |
9896846 |
T |
|
| Q |
417 |
gctaattacggctttctcccagtggatcctttg |
449 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
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| T |
9896845 |
gctagttacggctttctcccagtggatcctttg |
9896813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 63 - 449
Target Start/End: Original strand, 9864871 - 9865256
Alignment:
| Q |
63 |
cagtttttcggtttcctctttggtgcggttgcatggttaaggaacttgataattggagacaatgctccatttagagtaatccaaagcactcttgaattac |
162 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||| | |||||||| |||||||||||||| || || |||||| |||||||||||||| |
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| T |
9864871 |
cagtttttcggtttcctcttcggcgcggttgcatggttaaggaacctaataattggtgacaatgctccattcagtgttatccaagacactcttgaattac |
9864970 |
T |
|
| Q |
163 |
ttgggtatgtgccttaatatattcataaaaaccaaataatcc--aaagtctctacttcttttctaac-aacataattatttgtttaaacttaattctttg |
259 |
Q |
| |
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| ||||||||||||| | |||||||||||||||| ||| ||||| ||||||| ||||||||| || | |||||||||||||||||||| ||||| |
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| T |
9864971 |
tagggtatgtgccttcaa----tcataaaaaccaaatagtccttaaagtgtctactttttttctaaccaaaacaattatttgtttaaacttaactctttt |
9865066 |
T |
|
| Q |
260 |
cagaaatggaacaattccttgcatcacacttttgcttggtggtaacctcactgcaggcttgaaatcatcaagtgtaaaaccattgacactcatctgcatc |
359 |
Q |
| |
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||| |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
9865067 |
caggaatggaacaattccctgcatcacccttttgcttggtggtaaactcactgcaggcttgaaatcatcaagtgtaaaaccattgacactgatcagcatc |
9865166 |
T |
|
| Q |
360 |
atcataactcggcttttcgtactgcctgttattggattatttattgtgaaagccgcggctaattacggctttctcccagtggatcctttg |
449 |
Q |
| |
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|| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||| || || | |||| |||||||||||||||||||| |
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| T |
9865167 |
attataactcggctttttgtactacctgttattggattgtttattgtgaaagccgcagcgaacttcggcattctcccagtggatcctttg |
9865256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 55 - 449
Target Start/End: Complemental strand, 9907458 - 9907066
Alignment:
| Q |
55 |
tccataatcagtttttcggtttcctctttggtgcggttgcatggttaaggaacttgataattggagacaatgctccatttagagtaatccaaagcactct |
154 |
Q |
| |
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||||| |||||||||||||||||||||| || ||||||||||||||||| ||| | ||||| || ||||||||||||||||| || |||||| |||||| |
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| T |
9907458 |
tccatgatcagtttttcggtttcctcttcggcgcggttgcatggttaagaaacctaataatcggtgacaatgctccatttagtgttatccaagacactct |
9907359 |
T |
|
| Q |
155 |
tgaattacttgggtatgtgccttaatatattcataaaaaccaaataatcc--aaagtctctacttcttttctaacaacataattatttgtttaaacttaa |
252 |
Q |
| |
|
|||||||||||||||||| |||| | || |||| || ||||| ||| ||||| ||||||| ||||||||| | | | |||||||||||||| || |
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| T |
9907358 |
tgaattacttgggtatgtaccttcaa----tcttaaatacaaaatagtccttaaagtgtctactttttttctaaccaaaacaatatttgtttaaactcaa |
9907263 |
T |
|
| Q |
253 |
ttctttgcagaaatggaacaattccttgcatcacacttttgcttggtggtaacctcactgcaggcttgaaatcatcaagtgtaaaaccattgacactcat |
352 |
Q |
| |
|
||||| ||| |||||||||||||| |||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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|
| T |
9907262 |
ctctttccaggaatggaacaattccctgcatcacccttttactaggtggtaacctcactgcagggttgaaatcatcaagtgtaaaaccattgacactgat |
9907163 |
T |
|
| Q |
353 |
ctgcatcatcataactcggcttttcgtactgcctgttattggattatttattgtgaaagccgcggctaattacggctttctcccagtggatcctttg |
449 |
Q |
| |
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| ||||||| |||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||| | || |||| |||||||||||||||||||| |
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| T |
9907162 |
cagcatcattataactaggcttttcgtactacctgttattggattgtttattgtgaaagccgtggcgagtttcggcattctcccagtggatcctttg |
9907066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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